Tools from our research

Maintained by us or our collaborators — click a tool to go to its code or website.

OmniCorr

R-package for visualizing host–microbiota interactions using multi-omics data.

ComPlEx

R code for Comparative analysis of Plant co-Expression.

DiCE

R code for Differential Co-Expression network analysis.

PlantGenIE

Plant Genome Integrated Explorer — genomics tools including co-expression network analysis (Street Lab).

SalMotifDB

Salmonid Motif DataBase.

EVE

R code for the Expression Variance and Evolution model (Sandve Lab).

Rosetta

Rough Set Toolkit for Analysis of data (Komorowski lab).

Decommissioned

Older tools kept here for reference.

Synergy

Tools for exploring gene regulation in the cyanobacterium Synechocystis.

FragHMMent

Residue–residue contact prediction.

AspWood / NorWood

High-spatial-resolution transcriptomics profiles in aspen and Norway spruce — data in PlantGenIE.