Tools developed as part of our research

Maintained by us or some of our collaborators

Click the icon to go to the tool/code!

Transkingdom network analysis - integrating host-microbiota omics data

ComPlEx - R code for Comparative analysis of Plant co-Expression

DiCE - R code for Differential Co-Expression network analysis

PlantGenIE - Plant  Genome Integrated Explorer - Tools for genomics research, including co-expression network analysis (Street Lab)

SalMotifDB - Salmonid Motif DataBase

EVE - R code for the Expression Variance and Evolution model (Sandve Lab)

Rosetta - Rough Set Toolkitt for Analysis of data  (source code) (Komorowski lab)

Older stuff that has been decommissioned

Synergy - Tools for exploring the gene regulation in the cyanobacterium Synechocystis

FragHMMent - Residue-residue contact prediction

AspWood/NorWood - High-spatial-resolution transcriptomics profiles in Aspen and Norway spruce Wood formation - Data in PlantGenIE!