CSRE(1) AND RAP1(1) => SimExpr(other) OR SimExpr(YJR145C) : 3 8

    EXPR: (0.080) CSRE (P < 0.000) RAP1 (P < 0.184)

ORFSYMBOLPFCTF
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytosol
GCR1, GCR2, HSF1, RAP1
|YER047C|SAP1MSS11
YDR450WRPS18Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
|YOR213C|SAS5chromatin silencing at telomere ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
acetyltransferase activity ->
acetyltransferase activity
nuclear chromosome\, telomeric region, nuclear chromatin ->
chromosome\, telomeric region, chromatin, nuclear chromosome
GRF10(Pho2), SUM1
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
phosphopyruvate hydratase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytosol, cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
cytosol, cytoplasm, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YGL147CRPL9Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, MBP1, RAP1, SWI4
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
FHL1, RAP1
YPL090CRPS6Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
FHL1, GAT3, INO4, RAP1, YAP5
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (0.90)structural constituent of ribosome (0.70)cytosol (0.90)RAP1 (0.73)
Score:0.820.470.800.564
P-value:8.785E-03 (protein biosynthesis)5.221E-05 (structural constituent of ribosome)1.964E-05 (cytosol)1.131E-05 (RAP1)

RAP1(1) AND SFF(1) AND SWI5(1) => SimExpr(YJR145C) OR SimExpr(other) : 10 4

    EXPR: (0.090) SFF (P < 0.000) SWI5 (P < 0.000) RAP1 (P < 0.415)

ORFSYMBOLPFCTF
|YBR295W|PCA1copper ion homeostasis ->
cell homeostasis
P-type ATPase activity ->
ATPase activity\, coupled to transmembrane movement of substances, P-P-bond-hydrolysis-driven transporter activity, cation transporter activity
membrane ->
membrane
GAL4, SMP1
|YLR452C|SST2signal transduction, adaptation to pheromone during conjugation with cellular fusion ->
signal transduction, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
GTPase activator activity ->
GTPase activator activity
plasma membrane ->
membrane
DIG1, FHL1, RAP1, STE12
YOR369CRPS12protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
DNA metabolism, cell proliferation, catabolism
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
endonuclease activity, 3'-5' exonuclease activity, protein binding
nucleus ->
nucleus
RAP1
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YKR092CSRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
|YDR406W|PDR15transport ->
transport
ATP-binding cassette (ABC) transporter activity ->
ATPase activity\, coupled to transmembrane movement of substances, P-P-bond-hydrolysis-driven transporter activity
integral to membrane ->
membrane
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YLR441CRPS1Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, YAP5
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (0.64)structural constituent of ribosome (0.57)cytoplasm (0.64)RAP1 (0.77)
Score:0.410.320.440.731
P-value:3.354E-04 (protein biosynthesis)9.333E-05 (structural constituent of ribosome)1.252E-05 (cytosolic ribosome (sensu Eukarya))3.620E-07 (FHL1)

RAP1(1) AND LYS14(1) => SimExpr(YJR145C) OR SimExpr(other) : 5 2

    EXPR: (0.092) LYS14 (P < 0.002) RAP1 (P < 0.484)

ORFSYMBOLPFCTF
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
YNL302CRPS19Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YKL180WRPL17Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
|YBL093C|ROX3transcription from Pol II promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase II transcription mediator activity ->
RNA polymerase II transcription mediator activity
mediator complex, nucleus ->
nucleus
FHL1, RAP1
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
|YHL038C|CBP2RNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pre-mRNA splicing factor activity ->
pre-mRNA splicing factor activity
mitochondrion ->
cytoplasm
RAP1
YBR118WTEF2translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
Main:biosynthesis (0.71)structural constituent of ribosome (0.43)cytoplasm (0.86)RAP1 (1.00)
Score:0.520.140.711.000
P-value:1.041E-01 (protein biosynthesis)9.819E-02 (structural constituent of ribosome)4.950E-02 (ribosome)4.839E-07 (RAP1)

CSRE(1) AND mRRPE(1) AND SWI5(1) => SimExpr(YOR310C) OR SimExpr(other) : 5 1

    EXPR: (0.088) mRRPE (P < 0.014) SWI5 (P < 0.000) CSRE (P < 0.001)

ORFSYMBOLPFCTF
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
hypoxanthine phosphoribosyltransferase activity
YNL111CCYB5sterol biosynthesis ->
alcohol metabolism, biosynthesis, lipid metabolism
electron transporter activity ->
electron transporter activity
microsome ->
membrane fraction
ABF1, GCR2, GTS1, NRG1, REB1, ROX1
|YKL093W|MBR1aerobic respiration ->
energy pathways
YOR063WRPL3protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
GRF10(Pho2)
YKL181WPRS1histidine biosynthesis, tryptophan biosynthesis, purine salvage, 'de novo' IMP biosynthesis, 'de novo' pyrimidine base biosynthesis ->
amine metabolism, nucleotide biosynthesis, purine ribonucleotide metabolism, aromatic compound metabolism, amino acid derivative biosynthesis, biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, amino acid and derivative metabolism, organic acid metabolism, heterocycle metabolism
ribose-phosphate pyrophosphokinase activity ->
ribose-phosphate pyrophosphokinase activity
Main:biosynthesis (0.67)ribose-phosphate pyrophosphokinase activity (0.25)ribonucleoprotein complex (0.67)ABF1 (0.67)
Score:0.600.000.330.333
P-value:7.359E-03 (purine nucleotide biosynthesis)8.645E-01 (transferase activity)9.991E-01 (ribonucleoprotein complex)5.694E-01 (ABF1)

mRRPE(1) AND PAC(1) => SimExpr(YOR310C) OR SimExpr(other) : 27 2

    EXPR: (0.089) mRRPE (P < 0.000) PAC (P < 0.000)

ORFSYMBOLPFCTF
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
DNA binding, RNA binding
nucleolus, nucleus ->
nucleus
|YGL016W|KAP122protein-nucleus import, response to drug ->
response to abiotic stimulus, protein metabolism, cell growth and/or maintenance
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore ->
cytoplasm, nucleus, integral to membrane, endomembrane system
MSN2
YOR272WYTM1chromosome organization and biogenesis (sensu Eukarya), ribosomal large subunit biogenesis ->
cell growth and/or maintenance
nucleus, nucleolus ->
nucleus
LEU3, PUT3, REB1
YER110CKAP123protein-nucleus import ->
protein metabolism, cell growth and/or maintenance
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YBR104WYMC2transport ->
cell growth and/or maintenance
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YGL171WROK135S primary transcript processing, mRNA splicing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity, ATPase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
RGT1
YJL148WRPA34transcription from Pol I promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA-directed RNA polymerase activity ->
transferase activity\, transferring phosphorus-containing groups
DNA-directed RNA polymerase I complex, nucleus, nucleolus ->
nucleus
AZF1, CHA4, CUP9, DAL81, DIG1, FZF1, GCR1, GCR2, GLN3, HAL9, HAP2, HAP3, HMS1, LEU3, MAC1, MBP1, MET31, MOT3, NDD1, PDR1, PHD1, REB1, RLM1, RME1, ROX1, RPH1, RTS2, SKN7, SWI5, YAP6, ZAP1
YJL050WMTR435S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
YDR184CATC1response to stress, polar budding ->
response to stress, asexual reproduction
nucleus ->
nucleus
ARO80, GLN3, SIP4, SKO1
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
YBR247CENP1processing of 20S pre-rRNA, rRNA processing, cell growth and/or maintenance ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
nucleolus, nucleus ->
nucleus
YNL112WDBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Fungi)
YJL033WHCA435S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YHR089CGAR1rRNA modification, 35S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
RNA binding ->
RNA binding
nucleolus, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
CBF1, FZF1
YAL059WECM1cell wall organization and biogenesis ->
cell growth and/or maintenance
MOT3
YGR162WTIF4631translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
HSF1
YMR229CRRP5rRNA processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding, snoRNA binding ->
RNA binding
nucleolus, nucleolus organizer complex ->
nucleus
FHL1, RAP1
YJR002WMPP10rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex, nucleolus, nucleus ->
nucleus, ribonucleoprotein complex
YNL209WSSB2protein biosynthesis ->
biosynthesis, protein metabolism
chaperone activity, ATPase activity ->
chaperone activity, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
polysome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
ABF1, RFX1
YLR197WSIK1rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex, nucleus, nucleolus ->
nucleus, ribonucleoprotein complex
DAL81, HAL9
YPL043WNOP4rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YMR239CRNT135S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonuclease III activity ->
hydrolase activity\, acting on ester bonds, RNA binding
nucleolus ->
nucleus
YJL138CTIF2translational initiation, regulation of translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
translation factor activity\, nucleic acid binding, RNA binding
ribosome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
PHD1
YGL078CDBP3ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
YNL292WPUS4tRNA modification ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pseudouridylate synthase activity ->
carbon-oxygen lyase activity
mitochondrion, nucleus ->
cytoplasm, nucleus
RCS1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
|YHR128W|FUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
CIN5
Main:cell growth and/or maintenance (0.64)RNA binding (0.52)nucleus (0.76)ABF1 GLN3 FZF1 FKH2 PHD1 REB1 LEU3 FHL1 DAL81 RAP1 MOT3 HAL9 (0.11)
Score:0.620.300.710.053
P-value:9.273E-14 (ribosome biogenesis)6.040E-06 (RNA binding)6.059E-16 (nucleolus)1.000E+00

CSRE(1) AND PAC(1) => SimExpr(other) OR SimExpr(YOR310C) : 3 7

    EXPR: (0.090) PAC (P < 0.033) CSRE (P < 0.000)

ORFSYMBOLPFCTF
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
single-stranded DNA binding, RNA binding
nucleolus, nucleus ->
nucleus
YPL143WRPL33Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MET4, NDD1, PDR1, RAP1, RME1
|YBL066C|SEF1
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YBR034CHMT1peptidyl-arginine modification, mRNA-nucleus export ->
protein metabolism, transport, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
protein-arginine N-methyltransferase activity ->
protein-arginine N-methyltransferase activity
nucleus ->
nucleus
YDR087CRRP1rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
hypoxanthine phosphoribosyltransferase activity
|YER088C|DOT6filamentous growth, regulation of transcription from Pol II promoter, chromatin silencing at telomere, chromatin silencing at ribosomal DNA (rDNA), cell elongation ->
cell growth, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, DNA packaging, cell organization and biogenesis
RAP1, SKN7
|YML043C|RRN11transcription from Pol I promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase I transcription factor activity ->
RNA polymerase I transcription factor activity
RNA polymerase I transcription factor complex ->
nucleus
MAL13
YHR170WNMD3ribosomal large subunit assembly and maintenance ->
cell organization and biogenesis
RNA binding, protein binding ->
RNA binding, protein binding
cytosol, cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribosome
PHD1, REB1, SIP4
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.78)RNA binding (0.33)nucleus (0.67)RAP1 (0.40)
Score:0.750.070.530.100
P-value:3.384E-03 (transcription from Pol I promoter)1.145E+00 (RNA binding)3.786E-02 (nucleolus)1.000E+00

mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YOR310C) : 11

    EXPR: (0.079) mRRPE (P < 0.000) PAC (P < 0.000) SCB (P < 0.000)

ORFSYMBOLPFCTF
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
DNA binding, RNA binding
nucleolus, nucleus ->
nucleus
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YDR184CATC1response to stress, polar budding ->
response to stress, asexual reproduction
nucleus ->
nucleus
ARO80, GLN3, SIP4, SKO1
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
YNL112WDBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Fungi)
YLR197WSIK1rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex, nucleus, nucleolus ->
nucleus, ribonucleoprotein complex
DAL81, HAL9
YMR239CRNT135S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonuclease III activity ->
hydrolase activity\, acting on ester bonds, RNA binding
nucleolus ->
nucleus
YJL138CTIF2translational initiation, regulation of translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
translation factor activity\, nucleic acid binding, RNA binding
ribosome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
PHD1
YNL292WPUS4tRNA modification ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pseudouridylate synthase activity ->
carbon-oxygen lyase activity
mitochondrion, nucleus ->
cytoplasm, nucleus
RCS1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.60)RNA binding (0.50)nucleus (0.60)ABF1 (0.14)
Score:0.400.250.560.000
P-value:9.830E-04 (RNA modification)5.976E-02 (RNA binding)2.724E-03 (nucleolus)9.048E-01 (SKO1)

ALPHA1'(1) AND SFF'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YOR310C) : 7

    EXPR: (0.089) ALPHA1' (P < 0.000) SFF' (P < 0.000) mRRPE (P < 0.007) PAC (P < 0.033)

ORFSYMBOLPFCTF
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA helicase activity, ATP dependent helicase activity, RNA dependent ATPase activity
nucleolus ->
nucleus
HIR2, USV1
YER110CKAP123protein-nucleus import ->
protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YNL112WDBP2RNA helicase activity ->
RNA helicase activity
bud neck ->
site of polarized growth (sensu Fungi)
YNL292WPUS4tRNA modification ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pseudouridylate synthase activity ->
pseudouridylate synthase activity
mitochondrion, nucleus ->
cytoplasm, nucleus
RCS1
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
ribose-5-phosphate isomerase activity
FHL1, FKH2, RAP1
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.50)RNA helicase activity (0.33)nucleus (0.67)FKH2 (0.40)
Score:0.270.130.530.100
P-value:1.821E-02 (RNA modification)2.382E-02 (RNA helicase activity)1.639E-01 (nucleolus)1.689E-01 (FKH2)

CSRE(1) AND LYS14(1) AND ALPHA1'(1) => SimExpr(other) OR SimExpr(YOR063W) : 2 7

    EXPR: (0.100) LYS14 (P < 0.001) ALPHA1' (P < 0.001) CSRE (P < 0.001)

ORFSYMBOLPFCTF
|YGL038C|OCH1N-linked glycoprotein maturation ->
biosynthesis, protein metabolism
transferase activity\, transferring glycosyl groups, alpha-1\,6-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
Golgi cis cisterna ->
cytoplasm
CRZ1, SKN7, SWI4, SWI6
YLR153CACS2acetyl-CoA biosynthesis ->
biosynthesis, coenzymes and prosthetic group metabolism, organic acid metabolism
acetate-CoA ligase activity ->
ligase activity\, forming carbon-sulfur bonds
cytosol ->
cytoplasm
YBR143CSUP45translational termination ->
biosynthesis, protein metabolism
translation release factor activity\, codon specific ->
translation factor activity\, nucleic acid binding
cytosol ->
cytoplasm
FZF1
YOL052CSPE2pantothenate biosynthesis ->
biosynthesis, coenzymes and prosthetic group metabolism
adenosylmethionine decarboxylase activity ->
carbon-carbon lyase activity
YDL048CSTP4HIR2
YOR063WRPL3protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
GRF10(Pho2)
YDL131WLYS21lysine biosynthesis\, aminoadipic pathway ->
amine metabolism, amino acid and derivative metabolism, organic acid metabolism, biosynthesis
homocitrate synthase activity ->
carbon-carbon lyase activity
nucleus ->
nucleus
|YNL241C|ZWF1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
glucose-6-phosphate 1-dehydrogenase activity ->
oxidoreductase activity\, acting on CH-OH group of donors
cytoplasm ->
cytoplasm
ACE2, ADR1, FKH2, HIR1, IME4, MBP1, NDD1, PHO4, RCS1, SFP1, SKN7, SWI5
YIL052CRPL34Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
RME1
Main:biosynthesis (0.88)structural constituent of ribosome (0.25)cytoplasm (0.86)SKN7 (0.33)
Score:0.820.070.710.067
P-value:1.004E-02 (coenzyme metabolism)1.446E-01 (carbon-carbon lyase activity)3.665E-01 (cytosol)6.794E-01 (SKN7)

SWI5(1) AND PAC(1) => SimExpr(YDR399W) OR SimExpr(other) : 8 3

    EXPR: (0.104) SWI5 (P < 0.000) PAC (P < 0.135)

ORFSYMBOLPFCTF
|YGL016W|KAP122protein-nucleus import, response to drug ->
response to abiotic stimulus, protein metabolism, transport
protein carrier activity ->
protein carrier activity
cytoplasm, nuclear pore ->
cytoplasm, nucleus, integral to membrane, endomembrane system
MSN2
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
hypoxanthine phosphoribosyltransferase activity
YMR229CRRP5rRNA processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding, snoRNA binding ->
RNA binding, snoRNA binding
nucleolus, nucleolus organizer complex ->
nucleus
FHL1, RAP1
YJR002WMPP10rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex, nucleolus, nucleus ->
nucleus, ribonucleoprotein complex
YPL143WRPL33Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MET4, NDD1, PDR1, RAP1, RME1
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YKR092CSRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
|YIL066C|RNR3DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
ribonucleoside-diphosphate reductase activity
cytoplasm ->
cytoplasm
RFX1, STB1
|YFL011W|HXT10hexose transport ->
transport
glucose transporter activity, fructose transporter activity, mannose transporter activity, galactose transporter activity ->
glucose transporter activity, fructose transporter activity, mannose transporter activity, galactose transporter activity
plasma membrane ->
plasma membrane
GTS1, MBP1, RTG3
YHR089CGAR1rRNA modification, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
RNA binding ->
RNA binding
nucleolus, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
CBF1, FZF1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.55)RNA binding (0.22)nucleus (0.60)RAP1 (0.33)
Score:0.420.030.600.083
P-value:1.990E-04 (rRNA metabolism)1.335E+00 (RNA binding)1.072E-04 (nucleolus)3.231E-01 (MET4)

PAC(1) AND SCB(1) => SimExpr(other) OR SimExpr(YDR399W) : 7 15

    EXPR: (0.105) PAC (P < 0.056) SCB (P < 0.000)

ORFSYMBOLPFCTF
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
nucleic acid binding
nucleolus, nucleus ->
intracellular
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
intracellular, inner membrane
FKH1, FKH2
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
YLR197WSIK1rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex, nucleus, nucleolus ->
intracellular
DAL81, HAL9
YJL138CTIF2translational initiation, regulation of translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
nucleic acid binding
ribosome, cytoplasm ->
intracellular
PHD1
YNL141WAAH1adenine catabolism ->
aromatic compound metabolism, catabolism, heterocycle metabolism, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
adenine deaminase activity ->
hydrolase activity\, acting on carbon-nitrogen (but not peptide) bonds
YFL044C
YNL112WDBP2RNA helicase activity ->
nucleic acid binding
bud neck ->
site of polarized growth (sensu Fungi)
YER001WMNN1N-glycan processing, O-linked glycosylation ->
biosynthesis, protein metabolism
alpha-1\,3-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
Golgi apparatus ->
intracellular
HAL9, MAC1, NRG1, PHD1, RLM1, SKN7, SMP1, SWI4, SWI6, YAP6
|YIL118W|RHO3exocytosis, small GTPase mediated signal transduction, establishment of cell polarity (sensu Saccharomyces), actin filament organization ->
signal transduction, cell organization and biogenesis, transport
Rho small monomeric GTPase activity, signal transducer activity ->
purine nucleotide binding, signal transducer activity, hydrolase activity\, acting on acid anhydrides
intracellular ->
intracellular
CIN5, NRG1, PHD1, SKN7, SOK2, YAP6
|YFR034C|PHO4phosphate metabolism, cellular response to phosphate starvation ->
phosphorus metabolism, response to extracellular stimulus, response to biotic stimulus
transcription factor activity ->
nucleic acid binding
nucleus, cytoplasm ->
intracellular
YNL292WPUS4tRNA modification ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pseudouridylate synthase activity ->
carbon-oxygen lyase activity
mitochondrion, nucleus ->
intracellular
RCS1
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
intracellular
ABF1, SWI6
YDR184CATC1response to stress, polar budding ->
response to stress, asexual reproduction
nucleus ->
intracellular
ARO80, GLN3, SIP4, SKO1
|YBL099W|ATP1ATP synthesis coupled proton transport ->
transport
hydrogen-transporting ATP synthase activity ->
transporter activity
proton-transporting ATP synthase\, catalytic core (sensu Eukarya) ->
intracellular, integral to membrane, inner membrane
HAP4, ROX1
|YDR364C|CDC40DNA replication, S phase of mitotic cell cycle, mRNA splicing, mitotic spindle assembly (sensu Saccharomyces) ->
cytoplasm organization and biogenesis, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, M phase
nucleic acid binding, pre-mRNA splicing factor activity ->
nucleic acid binding
spliceosome complex, nuclear membrane, nuclear pore ->
pore complex, intracellular, endomembrane system
YJL208CNUC1DNA recombination ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
endodeoxyribonuclease activity, exodeoxyribonuclease activity, ribonuclease activity ->
hydrolase activity\, acting on ester bonds, nucleic acid binding
mitochondrial inner membrane ->
intracellular, inner membrane
|YIL066C|RNR3DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
oxidoreductase activity\, acting on CH2 groups
cytoplasm ->
intracellular
RFX1, STB1
YBR034CHMT1peptidyl-arginine modification, mRNA-nucleus export ->
protein metabolism, transport, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
protein-arginine N-methyltransferase activity ->
transferase activity\, transferring one-carbon groups
nucleus ->
intracellular
|YDR076W|RAD55meiotic DNA recombinase assembly, DNA recombinase assembly, double-strand break repair via synthesis-dependent strand annealing, double-strand break repair via break-induced replication, double-strand break repair via single-strand annealing ->
mating-type determination, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
protein binding ->
protein binding
nucleus ->
intracellular
DAL81
YMR239CRNT135S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonuclease III activity ->
hydrolase activity\, acting on ester bonds, nucleic acid binding
nucleolus ->
intracellular
|YML043C|RRN11transcription from Pol I promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase I transcription factor activity ->
RNA polymerase I transcription factor activity
RNA polymerase I transcription factor complex ->
intracellular
MAL13
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
nucleic acid binding
ribosome ->
intracellular
INO2, INO4
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.62)nucleic acid binding (0.42)intracellular (0.95)PHD1 (0.21)
Score:0.460.180.900.066
P-value:1.462E-02 (RNA modification)7.448E-02 (RNA binding)6.764E-03 (nucleolus)5.851E-01 (HAL9)

CSRE(1) AND PAC(1) => SimExpr(other) OR SimExpr(YDR399W) : 3 7

mRRPE(1) AND PAC(1) => SimExpr(YDR399W) OR SimExpr(other) : 27 2

mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YDR399W) : 11

CSRE(1) AND PAC(1) => SimExpr(other) OR SimExpr(YBR034C) : 3 7

CSRE(1) AND PAC(1) => SimExpr(other) OR SimExpr(YPL143W) : 3 7

mRRPE(1) AND PAC(1) => SimExpr(YGR159C) OR SimExpr(other) : 28 1

CSRE(1) AND PAC(1) => SimExpr(YGR159C) OR SimExpr(other) : 8 2

CSRE(1) AND PAC(1) AND SCB(1) => SimExpr(YGR159C) : 5

    EXPR: (0.070) PAC (P < 0.006) SCB (P < 0.000) CSRE (P < 0.000)

ORFSYMBOLPFCTF
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
single-stranded DNA binding, RNA binding
nucleolus, nucleus ->
nucleus
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
hypoxanthine phosphoribosyltransferase activity
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YBR034CHMT1peptidyl-arginine modification, mRNA-nucleus export ->
protein metabolism, transport, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
protein-arginine N-methyltransferase activity ->
protein-arginine N-methyltransferase activity
nucleus ->
nucleus
YML043CRRN11transcription from Pol I promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase I transcription factor activity ->
RNA polymerase I transcription factor activity
RNA polymerase I transcription factor complex ->
nucleus
MAL13
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (1.00)RNA binding (0.25)nucleus (1.00)ABF1 (0.50)
Score:1.000.001.000.000
P-value:4.879E-03 (transcription from Pol I promoter)6.354E-01 (transferase activity)1.622E-03 (nucleolus)1.397E-01 (MAL13)

mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YGR159C) : 11

mRRPE(1) AND PAC(1) AND MCM1'(1) => SimExpr(YGR159C) : 6

    EXPR: (0.074) mRRPE (P < 0.000) PAC (P < 0.011) MCM1' (P < 0.000)

ORFSYMBOLPFCTF
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
single-stranded DNA binding, RNA binding
nucleolus, nucleus ->
nucleolus, nucleus
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
transferase activity\, transferring pentosyl groups
YHR128WFUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring pentosyl groups
CIN5
YPL043WNOP4rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleolus
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
small nuclear ribonucleoprotein complex, nucleolus, ribonucleoprotein complex
ABF1, SWI6
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity\, interconverting aldoses and ketoses
FHL1, FKH2, RAP1
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.83)transferase activity\, transferring pentosyl groups (0.40)nucleolus (1.00)ABF1 (0.33)
Score:0.670.201.000.000
P-value:6.463E-03 (rRNA processing)9.418E-03 (transferase activity\, transferring pentosyl groups)3.174E-03 (nucleolus)1.000E+00

CSRE(1) AND LYS14(1) AND ALPHA1'(1) => SimExpr(other) OR SimExpr(YIL052C) : 2 7

SFF'(1) AND SWI5(1) AND MCB(1) => SimExpr(YDR309C) OR SimExpr(other) : 6 2

    EXPR: (0.109) SFF' (P < 0.000) SWI5 (P < 0.000) MCB (P < 0.024)

ORFSYMBOLPFCTF
YOL006CTOP1negative regulation of recombination within rDNA repeats, DNA topological change, DNA strand elongation, chromatin assembly/disassembly, regulation of transcription from Pol II promoter, RNA elongation from Pol II promoter, mitotic chromosome condensation, nuclear migration ->
cell organization and biogenesis, cell cycle, mitotic cell cycle, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA topoisomerase type I activity ->
DNA topoisomerase type I activity
nucleus ->
nucleus
REB1
YDR297WSUR2sphingolipid metabolism, sphingolipid biosynthesis ->
lipid metabolism, biosynthesis
sphingosine hydroxylase activity ->
sphingosine hydroxylase activity
endoplasmic reticulum ->
cytoplasm
CBF1, MTH1
YDR309CGIC2axial budding, Rho protein signal transduction, establishment of cell polarity (sensu Saccharomyces) ->
asexual reproduction, signal transduction, cell organization and biogenesis
small GTPase regulatory/interacting protein activity ->
small GTPase regulatory/interacting protein activity
actin cap (sensu Saccharomyces), bud tip, shmoo tip, incipient bud site ->
cell cortex, site of polarized growth (sensu Fungi), incipient bud site, cytoplasm
ASH1, HSF1, MBP1, PHD1, RLM1, SKN7, STB1, STE12, SWI4, SWI6
|YKL042W|SPC42microtubule nucleation, spindle pole body duplication (sensu Saccharomyces) ->
cell organization and biogenesis, cell proliferation
structural constituent of cytoskeleton ->
structural constituent of cytoskeleton
intermediate layer of spindle pole body, central plaque of spindle pole body ->
cytoplasm
YIL066CRNR3DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
ribonucleoside-diphosphate reductase activity
cytoplasm ->
cytoplasm
RFX1, STB1
YMR179WSPT21regulation of transcription from Pol II promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
MBP1, STB1, SWI4, SWI6, UGA3
YER070WRNR1DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
ribonucleoside-diphosphate reductase activity
cytoplasm ->
cytoplasm
FKH2, MBP1, REB1, SWI4, SWI6
|YDR052C|DBF4DNA replication initiation, regulation of DNA replication, protein amino acid phosphorylation ->
phosphorus metabolism, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, protein metabolism
protein serine/threonine kinase activity ->
protein serine/threonine kinase activity
nucleoplasm ->
nucleus
IME4, NRG1
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.62)ribonucleoside-diphosphate reductase activity (0.29)cytoplasm (0.71)SWI4 MBP1 SWI6 STB1 (0.43)
Score:0.570.050.520.286
P-value:5.078E-04 (DNA replication and chromosome cycle)1.156E-03 (oxidoreductase activity\, acting on CH2 groups\, disulfide as acceptor)3.629E-01 (cytoskeleton)2.080E-03 (STB1)

Gcr1(1) AND ATRepeat(1) => SimExpr(other) OR SimExpr(YKL152C) : 2 5

    EXPR: (0.114) Gcr1 (P < 0.232) ATRepeat (P < 0.013)

ORFSYMBOLPFCTF
YGL038COCH1N-linked glycoprotein maturation ->
biosynthesis, protein metabolism
transferase activity\, transferring glycosyl groups, alpha-1\,6-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups, alpha-1\,6-mannosyltransferase activity
Golgi cis cisterna ->
cytoplasm
CRZ1, SKN7, SWI4, SWI6
|YCL027W|FUS1conjugation with cellular fusion ->
conjugation, sexual reproduction
plasma membrane, shmoo tip ->
plasma membrane, site of polarized growth (sensu Fungi)
DIG1, STE12
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
YKR097WPCK1gluconeogenesis ->
alcohol metabolism, carbohydrate metabolism, biosynthesis, energy pathways
phosphoenolpyruvate carboxykinase (ATP) activity ->
phosphoenolpyruvate carboxykinase (ATP) activity
cytosol ->
cytoplasm
MCM1, MTH1, SIP4, SKN7
YLR354CTAL1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
transaldolase activity ->
transaldolase activity
cytoplasm ->
cytoplasm
MBP1
YLR121CYPS3protein metabolism ->
protein metabolism
aspartic-type endopeptidase activity ->
aspartic-type endopeptidase activity
plasma membrane ->
plasma membrane
CIN5, SWI4, YAP6
|YDR263C|DIN7DNA repair ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nuclease activity ->
nuclease activity
mitochondrion ->
cytoplasm
FKH1, FKH2, MBP1, SWI6
Main:alcohol metabolism (0.43)transaldolase activity (0.17)cytoplasm (0.71)SWI4 MBP1 SWI6 SKN7 (0.29)
Score:0.290.000.520.190
P-value:1.851E-02 (glucose metabolism)4.167E-01 (enzyme activity)7.473E-01 (plasma membrane)3.556E-01 (MBP1)

LYS14(1) AND ATRepeat(1) => SimExpr(YKL152C) OR SimExpr(other) : 5 1

    EXPR: (0.098) LYS14 (P < 0.001) ATRepeat (P < 0.001)

ORFSYMBOLPFCTF
YGL038COCH1N-linked glycoprotein maturation ->
biosynthesis, protein metabolism
transferase activity\, transferring glycosyl groups, alpha-1\,6-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups, alpha-1\,6-mannosyltransferase activity
Golgi cis cisterna ->
cytoplasm
CRZ1, SKN7, SWI4, SWI6
YLR153CACS2acetyl-CoA biosynthesis ->
biosynthesis, coenzymes and prosthetic group metabolism, organic acid metabolism
acetate-CoA ligase activity ->
acetate-CoA ligase activity
cytosol ->
cytoplasm
YDR226WADK1cell proliferation ->
cell proliferation
adenylate kinase activity ->
adenylate kinase activity
cytoplasm, mitochondrial intermembrane space ->
cytoplasm
PUT3
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
YDL048CSTP4HIR2
|YBR115C|LYS2lysine biosynthesis\, aminoadipic pathway ->
amine metabolism, amino acid and derivative metabolism, organic acid metabolism, biosynthesis
aminoadipate-semialdehyde dehydrogenase activity ->
aminoadipate-semialdehyde dehydrogenase activity
cytoplasm ->
cytoplasm
DAL81, GCN4
Main:biosynthesis (0.80)adenylate kinase activity (0.20)cytoplasm (1.00)GCR2 (0.20)
Score:0.600.001.000.000
P-value:3.970E-01 (biosynthesis)5.543E-01 (enzyme activity)1.341E+00 (cytosol)6.676E-01 (CRZ1)

CSRE(1) AND RAP1(1) => SimExpr(YKL152C) OR SimExpr(other) : 8 3

CSRE(1) AND RAP1(1) AND SFF(1) => SimExpr(YKL152C) : 6

    EXPR: (0.075) SFF (P < 0.000) CSRE (P < 0.000) RAP1 (P < 0.005)

ORFSYMBOLPFCTF
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
FHL1, RAP1
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
cytosol, cytoplasm, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytosol
GCR1, GCR2, HSF1, RAP1
YGR254WENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
phosphopyruvate hydratase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytosol, cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (1.00)structural constituent of ribosome (0.67)cytosol (1.00)RAP1 (0.83)
Score:1.000.401.000.733
P-value:1.366E-02 (biosynthesis)5.227E-03 (structural constituent of ribosome)1.572E-04 (cytosol)5.499E-04 (RAP1)

CSRE(1) AND RAP1(1) AND SFF'(1) => SimExpr(YKL152C) : 7

    EXPR: (0.078) SFF' (P < 0.000) CSRE (P < 0.000) RAP1 (P < 0.006)

ORFSYMBOLPFCTF
YGL147CRPL9Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, MBP1, RAP1, SWI4
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
FHL1, RAP1
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
cytosol, cytoplasm, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytosol
GCR1, GCR2, HSF1, RAP1
YGR254WENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
phosphopyruvate hydratase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytosol, cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (1.00)structural constituent of ribosome (0.71)cytosol (1.00)RAP1 (0.86)
Score:1.000.481.000.762
P-value:3.801E-03 (biosynthesis)5.957E-04 (structural constituent of ribosome)2.278E-05 (cytosol)6.256E-05 (RAP1)

CSRE(1) AND RAP1(1) => SimExpr(other) OR SimExpr(YNL069C) : 2 9

CSRE(1) AND RAP1(1) AND SWI5(1) => SimExpr(YNL069C) : 5

    EXPR: (0.065) SWI5 (P < 0.000) CSRE (P < 0.002) RAP1 (P < 0.143)

ORFSYMBOLPFCTF
YDR450WRPS18Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosolic ribosome (sensu Eukarya), eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, small ribosomal subunit
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YJR145CRPS4Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
cytosolic ribosome (sensu Eukarya), cytoplasm, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, small ribosomal subunit
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YLR344WRPL26Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosolic ribosome (sensu Eukarya), large ribosomal subunit
FHL1, RAP1
YOR213CSAS5chromatin silencing at telomere ->
chromatin silencing at telomere
acetyltransferase activity ->
acetyltransferase activity
nuclear chromosome\, telomeric region, nuclear chromatin ->
nuclear chromosome\, telomeric region, nuclear chromatin
GRF10(Pho2), SUM1
YNL069CRPL16Bprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosolic ribosome (sensu Eukarya), large ribosomal subunit
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:protein biosynthesis (0.80)structural constituent of ribosome (0.80)cytosolic ribosome (sensu Eukarya) (0.80)FHL1 RAP1 (0.80)
Score:0.600.600.600.600
P-value:1.692E-02 (protein biosynthesis)1.631E-03 (structural constituent of ribosome)1.479E-03 (cytosolic ribosome (sensu Eukarya))9.113E-04 (FHL1)

RAP1(1) => SimExpr(other) OR SimExpr(YLR344W) : 15 36

    EXPR: (0.103) RAP1 (P < 0.584)

ORFSYMBOLPFCTF
|YMR013C|SEC59protein-ER targeting, protein amino acid glycosylation ->
cell organization and biogenesis, biosynthesis, protein modification, protein metabolism, transport
dolichol kinase activity ->
transferase activity\, transferring phosphorus-containing groups
membrane ->
membrane
FHL1, NDD1, RAP1, RLM1, RME1
YOL121CRPS19Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
AZF1, FHL1, GCR1, GCR2, HAL9, MET31, MOT3, PDR1, RAP1, ROX1, RPH1, SMP1, YAP6, ZAP1
|YLR452C|SST2signal transduction, adaptation to pheromone during conjugation with cellular fusion ->
signal transduction, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
GTPase activator activity ->
small GTPase regulatory/interacting protein activity
plasma membrane ->
membrane
DIG1, FHL1, RAP1, STE12
|YLR208W|SEC13nonselective vesicle assembly, ER to Golgi transport, ER-associated protein catabolism ->
macromolecule catabolism, transport, protein metabolism
cytoplasm, COPII vesicle coat, nuclear pore, extrinsic to plasma membrane ->
nucleus, cytoplasm, membrane coat, membrane
|YEL056W|HAT2chromatin assembly/disassembly, chromatin silencing at telomere ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
H3/H4 histone acetyltransferase activity ->
transferase activity\, transferring acyl groups
cytoplasm, nucleus ->
cytoplasm, nucleus
GAL4
|YBL022C|PIM1proteolysis and peptidolysis, response to heat ->
catabolism, response to abiotic stimulus, protein metabolism
ATP-dependent peptidase activity ->
peptidase activity
mitochondrial matrix ->
cytoplasm
RAP1
|YBR117C|TKL2pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
transketolase activity ->
transferase activity\, transferring aldehyde or ketonic groups
FHL1, RAP1
YKR057WRPS21Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ABF1, FHL1
|YHL038C|CBP2RNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pre-mRNA splicing factor activity ->
RNA binding
mitochondrion ->
cytoplasm
RAP1
YDL130WRPP1Bprotein biosynthesis, translational elongation ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAL4, RAP1, RFX1
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YGL147CRPL9Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MBP1, RAP1, SWI4
YLR441CRPS1Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, YAP5
YLR146CSPE4pantothenate biosynthesis, spermine biosynthesis ->
biosynthesis, amine metabolism, coenzymes and prosthetic group metabolism, amino acid and derivative metabolism, secondary metabolism
spermine synthase activity ->
transferase activity\, transferring alkyl or aryl (other than methyl) groups
YBR181CRPS6Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, MAL13, RAP1, RGM1
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YJR123WRPS5protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GRF10(Pho2), HSF1, MSN4, YAP1
YDL136WRPL35Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, INO4, MSS11, RAP1
YDR450WRPS18Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YOR369CRPS12protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
|YDR406W|PDR15transport ->
transport
ATP-binding cassette (ABC) transporter activity ->
purine nucleotide binding, primary active transporter activity, hydrolase activity\, acting on acid anhydrides
integral to membrane ->
membrane
YBR118WTEF2translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YLR061WRPL22Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
BAS1, FHL1, HIR1, PDR1, RAP1, RCS1, RME1, ZAP1
YDR418WRPL12Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, SMP1
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
intramolecular transferase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
YNL302CRPS19Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
|YMR231W|PEP5nonselective vesicle docking, homotypic vacuole fusion (non-autophagic), Golgi to endosome transport, late endosome to vacuole transport ->
cell organization and biogenesis, transport, vesicle-mediated transport
vacuolar membrane (sensu Fungi) ->
cytoplasm, vacuole
ARG81, DOT6, HAL9, HAP2, MCM1, YAP1
YGL030WRPL30protein biosynthesis, rRNA processing, mRNA splicing, regulation of translation ->
cell organization and biogenesis, biosynthesis, transcription, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, SFP1
|YER047C|SAP1MSS11
YIL018WRPL2Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SWI5, YAP5
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
carbon-oxygen lyase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YKR092CSRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YGL076CRPL7Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YBR048WRPS11Bprotein biosynthesis, ribosomal small subunit assembly and maintenance, regulation of translational fidelity ->
cell organization and biogenesis, biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
GAL4, HAP4, LEU3, MET31, MSN1
YJR139CHOM6homoserine biosynthesis, methionine metabolism, threonine metabolism ->
amine metabolism, sulfur metabolism, biosynthesis, amino acid and derivative metabolism, organic acid metabolism
homoserine dehydrogenase activity ->
oxidoreductase activity\, acting on CH-OH group of donors
HMS1, RAP1
|YBR295W|PCA1copper ion homeostasis ->
cell homeostasis
P-type ATPase activity ->
purine nucleotide binding, primary active transporter activity, cation transporter activity, hydrolase activity\, acting on acid anhydrides
membrane ->
membrane
GAL4, SMP1
YKL180WRPL17Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
|YBL093C|ROX3transcription from Pol II promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase II transcription mediator activity ->
general RNA polymerase II transcription factor activity
mediator complex, nucleus ->
nucleus
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
YOR213CSAS5chromatin silencing at telomere ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
acetyltransferase activity ->
transferase activity\, transferring acyl groups
nuclear chromosome\, telomeric region, nuclear chromatin ->
chromosome, nuclear chromosome
GRF10(Pho2), SUM1
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
DNA metabolism, cell proliferation, catabolism
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
hydrolase activity\, acting on ester bonds, protein binding
nucleus ->
nucleus
RAP1
|YMR193W|MRPL24protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
mitochondrial large ribosomal subunit ->
cytoplasm, ribonucleoprotein complex
ARO80, HAP4, HAP5, LEU3, MET31, RTG1, RTG3, STE12, STP1, UGA3
YHL033CRPL8Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YPL090CRPS6Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, INO4, RAP1, YAP5
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (0.74)structural constituent of ribosome (0.62)cytoplasm (0.83)RAP1 (0.70)
Score:0.640.390.700.659
P-value:5.960E-15 (protein biosynthesis)4.524E-20 (structural constituent of ribosome)3.720E-22 (cytosolic ribosome (sensu Eukarya))1.617E-27 (FHL1)

RAP1(1) AND ALPHA1'(1) => SimExpr(other) OR SimExpr(YLR344W) : 9 20

    EXPR: (0.105) ALPHA1' (P < 0.000) RAP1 (P < 0.639)

ORFSYMBOLPFCTF
|YMR013C|SEC59protein-ER targeting, protein amino acid glycosylation ->
cell organization and biogenesis, biosynthesis, protein modification, protein metabolism, transport
dolichol kinase activity ->
transferase activity\, transferring phosphorus-containing groups
membrane ->
membrane
FHL1, NDD1, RAP1, RLM1, RME1
YOL121CRPS19Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
AZF1, FHL1, GCR1, GCR2, HAL9, MET31, MOT3, PDR1, RAP1, ROX1, RPH1, SMP1, YAP6, ZAP1
|YEL056W|HAT2chromatin assembly/disassembly, chromatin silencing at telomere ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
H3/H4 histone acetyltransferase activity ->
transferase activity\, transferring acyl groups
cytoplasm, nucleus ->
cytoplasm, nucleus
GAL4
|YBL022C|PIM1proteolysis and peptidolysis, response to heat ->
catabolism, response to abiotic stimulus, protein metabolism
ATP-dependent peptidase activity ->
peptidase activity
mitochondrial matrix ->
cytoplasm
RAP1
|YBR117C|TKL2pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
transketolase activity ->
transferase activity\, transferring aldehyde or ketonic groups
FHL1, RAP1
|YHL038C|CBP2RNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pre-mRNA splicing factor activity ->
RNA binding
mitochondrion ->
cytoplasm
RAP1
YDL130WRPP1Bprotein biosynthesis, translational elongation ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAL4, RAP1, RFX1
YLR146CSPE4pantothenate biosynthesis, spermine biosynthesis ->
biosynthesis, amine metabolism, coenzymes and prosthetic group metabolism, amino acid and derivative metabolism, secondary metabolism
spermine synthase activity ->
transferase activity\, transferring alkyl or aryl (other than methyl) groups
YBR181CRPS6Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, MAL13, RAP1, RGM1
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YJR123WRPS5protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GRF10(Pho2), HSF1, MSN4, YAP1
YDL136WRPL35Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, INO4, MSS11, RAP1
YOR369CRPS12protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YBR118WTEF2translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YLR061WRPL22Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
BAS1, FHL1, HIR1, PDR1, RAP1, RCS1, RME1, ZAP1
YDR418WRPL12Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, SMP1
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
|YMR231W|PEP5nonselective vesicle docking, homotypic vacuole fusion (non-autophagic), Golgi to endosome transport, late endosome to vacuole transport ->
cell organization and biogenesis, transport, vesicle-mediated transport
vacuolar membrane (sensu Fungi) ->
cytoplasm, vacuole
ARG81, DOT6, HAL9, HAP2, MCM1, YAP1
|YER047C|SAP1MSS11
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
carbon-oxygen lyase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YGL076CRPL7Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YBR048WRPS11Bprotein biosynthesis, ribosomal small subunit assembly and maintenance, regulation of translational fidelity ->
cell organization and biogenesis, biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
GAL4, HAP4, LEU3, MET31, MSN1
|YBR295W|PCA1copper ion homeostasis ->
cell homeostasis
P-type ATPase activity ->
purine nucleotide binding, primary active transporter activity, cation transporter activity, hydrolase activity\, acting on acid anhydrides
membrane ->
membrane
GAL4, SMP1
YKL180WRPL17Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YOR213CSAS5chromatin silencing at telomere ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
acetyltransferase activity ->
transferase activity\, transferring acyl groups
nuclear chromosome\, telomeric region, nuclear chromatin ->
chromosome, nuclear chromosome
GRF10(Pho2), SUM1
YHL033CRPL8Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
YPL090CRPS6Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, INO4, RAP1, YAP5
Main:biosynthesis (0.75)structural constituent of ribosome (0.63)cytoplasm (0.88)FHL1 (0.67)
Score:0.670.400.780.590
P-value:2.231E-08 (protein biosynthesis)4.607E-11 (structural constituent of ribosome)1.179E-12 (cytosolic ribosome (sensu Eukarya))1.850E-14 (FHL1)

RAP1(1) AND SWI5(1) => SimExpr(other) OR SimExpr(YLR344W) : 6 14

    EXPR: (0.100) SWI5 (P < 0.000) RAP1 (P < 0.475)

ORFSYMBOLPFCTF
|YMR013C|SEC59protein-ER targeting, protein amino acid glycosylation ->
cell organization and biogenesis, biosynthesis, protein modification, protein metabolism, transport
dolichol kinase activity ->
dolichol kinase activity
membrane ->
membrane
FHL1, NDD1, RAP1, RLM1, RME1
|YLR452C|SST2signal transduction, adaptation to pheromone during conjugation with cellular fusion ->
signal transduction, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
GTPase activator activity ->
GTPase activator activity
plasma membrane ->
membrane
DIG1, FHL1, RAP1, STE12
|YEL056W|HAT2chromatin assembly/disassembly, chromatin silencing at telomere ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
H3/H4 histone acetyltransferase activity ->
acetyltransferase activity
cytoplasm, nucleus ->
cytoplasm, nucleus
GAL4
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YLR441CRPS1Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, YAP5
YBR181CRPS6Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, MAL13, RAP1, RGM1
YDR450WRPS18Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YOR369CRPS12protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
|YDR406W|PDR15transport ->
transport
ATP-binding cassette (ABC) transporter activity ->
ATPase activity, P-P-bond-hydrolysis-driven transporter activity, hydrolase activity\, acting on acid anhydrides\, catalyzing transmembrane movement of substances
integral to membrane ->
membrane
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YGL030WRPL30protein biosynthesis, rRNA processing, mRNA splicing, regulation of translation ->
cell organization and biogenesis, biosynthesis, transcription, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, SFP1
YKR092CSRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
|YBR295W|PCA1copper ion homeostasis ->
cell homeostasis
P-type ATPase activity ->
ATPase activity, P-P-bond-hydrolysis-driven transporter activity, cation transporter activity, hydrolase activity\, acting on acid anhydrides\, catalyzing transmembrane movement of substances
membrane ->
membrane
GAL4, SMP1
YOR213CSAS5chromatin silencing at telomere ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
acetyltransferase activity ->
acetyltransferase activity
nuclear chromosome\, telomeric region, nuclear chromatin ->
chromosome, nuclear chromosome
GRF10(Pho2), SUM1
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
DNA metabolism, cell proliferation, catabolism
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
endonuclease activity, 3'-5' exonuclease activity, protein binding
nucleus ->
nucleus
RAP1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (0.65)structural constituent of ribosome (0.55)cytoplasm (0.65)RAP1 (0.74)
Score:0.450.300.460.637
P-value:1.090E-05 (protein biosynthesis)2.358E-06 (structural constituent of ribosome)1.313E-07 (cytosolic ribosome (sensu Eukarya))1.232E-10 (FHL1)

RAP1(1) AND MCM1'(1) => SimExpr(other) OR SimExpr(YLR344W) : 5 16

    EXPR: (0.090) MCM1' (P < 0.000) RAP1 (P < 0.115)

ORFSYMBOLPFCTF
|YLR452C|SST2signal transduction, adaptation to pheromone during conjugation with cellular fusion ->
signal transduction, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
GTPase activator activity ->
small GTPase regulatory/interacting protein activity
plasma membrane ->
plasma membrane
DIG1, FHL1, RAP1, STE12
|YBR117C|TKL2pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
transketolase activity ->
transferase activity\, transferring aldehyde or ketonic groups
FHL1, RAP1
|YHL038C|CBP2RNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pre-mRNA splicing factor activity ->
RNA binding
mitochondrion ->
cytoplasm
RAP1
YDL130WRPP1Bprotein biosynthesis, translational elongation ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAL4, RAP1, RFX1
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YGL147CRPL9Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MBP1, RAP1, SWI4
YLR146CSPE4pantothenate biosynthesis, spermine biosynthesis ->
biosynthesis, amine metabolism, coenzymes and prosthetic group metabolism, amino acid and derivative metabolism, secondary metabolism
spermine synthase activity ->
transferase activity\, transferring alkyl or aryl (other than methyl) groups
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YDR450WRPS18Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YLR061WRPL22Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
BAS1, FHL1, HIR1, PDR1, RAP1, RCS1, RME1, ZAP1
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
intramolecular transferase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
YGL030WRPL30protein biosynthesis, rRNA processing, mRNA splicing, regulation of translation ->
cell organization and biogenesis, biosynthesis, transcription, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, SFP1
YIL018WRPL2Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SWI5, YAP5
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
carbon-oxygen lyase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YJR139CHOM6homoserine biosynthesis, methionine metabolism, threonine metabolism ->
amine metabolism, sulfur metabolism, biosynthesis, amino acid and derivative metabolism, organic acid metabolism
homoserine dehydrogenase activity ->
oxidoreductase activity\, acting on CH-OH group of donors
HMS1, RAP1
|YBL093C|ROX3transcription from Pol II promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase II transcription mediator activity ->
general RNA polymerase II transcription factor activity
mediator complex, nucleus ->
nucleus
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
YPL090CRPS6Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, INO4, RAP1, YAP5
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (0.81)structural constituent of ribosome (0.62)cytoplasm (0.89)RAP1 (0.90)
Score:0.680.390.780.916
P-value:2.807E-05 (biosynthesis)5.563E-09 (structural constituent of ribosome)5.032E-10 (cytosolic ribosome (sensu Eukarya))1.578E-15 (RAP1)

CSRE(1) AND RAP1(1) => SimExpr(other) OR SimExpr(YLR344W) : 2 9

RAP1(1) AND SCB(1) => SimExpr(YLR344W) OR SimExpr(other) : 8 1

    EXPR: (0.084) SCB (P < 0.000) RAP1 (P < 0.119)

ORFSYMBOLPFCTF
|YLR208W|SEC13nonselective vesicle assembly, ER to Golgi transport, ER-associated protein catabolism ->
vesicle-mediated transport, intracellular transport, macromolecule catabolism, secretory pathway, protein metabolism
cytoplasm, COPII vesicle coat, nuclear pore, extrinsic to plasma membrane ->
nucleus, extrinsic to membrane, cytoplasm, membrane coat, integral to membrane, endomembrane system, plasma membrane
YOR369CRPS12protein biosynthesis ->
macromolecule biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
macromolecule biosynthesis, cytoplasm organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YBL087CRPL23Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YBR118WTEF2translational elongation ->
macromolecule biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YLR344WRPL26Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
macromolecule biosynthesis, cytoplasm organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
YHL033CRPL8Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
YLR249WYEF3translational elongation ->
macromolecule biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:protein metabolism (1.00)structural constituent of ribosome (0.75)cytoplasm (1.00)FHL1 (0.88)
Score:1.000.571.000.750
P-value:2.819E-05 (protein biosynthesis)2.238E-04 (structural constituent of ribosome)1.586E-06 (ribosome)1.471E-06 (FHL1)

RAP1(1) AND SWI5(1) AND MCM1'(1) => SimExpr(YLR344W) OR SimExpr(other) : 6 1

    EXPR: (0.070) SWI5 (P < 0.000) MCM1' (P < 0.000) RAP1 (P < 0.030)

ORFSYMBOLPFCTF
|YLR452C|SST2signal transduction, adaptation to pheromone during conjugation with cellular fusion ->
signal transduction, adaptation to pheromone during conjugation with cellular fusion
GTPase activator activity ->
GTPase activator activity
plasma membrane ->
plasma membrane
DIG1, FHL1, RAP1, STE12
YKL006WRPL14Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosolic ribosome (sensu Eukarya), large ribosomal subunit
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YDR450WRPS18Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosolic ribosome (sensu Eukarya), eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, small ribosomal subunit
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YLR344WRPL26Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosolic ribosome (sensu Eukarya), large ribosomal subunit
FHL1, RAP1
YGL030WRPL30protein biosynthesis, rRNA processing, mRNA splicing, regulation of translation ->
protein biosynthesis, rRNA processing, mRNA splicing, regulation of translation
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytosolic ribosome (sensu Eukarya), cytoplasm, large ribosomal subunit
FHL1, GAT3, RAP1, SFP1
YER074WRPS24Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosolic ribosome (sensu Eukarya), eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, small ribosomal subunit
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YNL069CRPL16Bprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosolic ribosome (sensu Eukarya), large ribosomal subunit
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:protein biosynthesis (0.86)structural constituent of ribosome (0.86)cytosolic ribosome (sensu Eukarya) (0.86)RAP1 FHL1 (1.00)
Score:0.710.710.711.000
P-value:5.608E-04 (protein biosynthesis)1.504E-05 (structural constituent of ribosome)8.648E-06 (cytosolic ribosome (sensu Eukarya))3.457E-08 (FHL1)

RAP1(1) AND ALPHA1'(1) AND MCM1'(1) => SimExpr(other) OR SimExpr(YLR344W) : 3 7

    EXPR: (0.092) ALPHA1' (P < 0.000) MCM1' (P < 0.000) RAP1 (P < 0.281)

ORFSYMBOLPFCTF
|YBR117C|TKL2pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
transketolase activity ->
transferase activity\, transferring aldehyde or ketonic groups
FHL1, RAP1
|YHL038C|CBP2RNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pre-mRNA splicing factor activity ->
RNA binding
mitochondrion ->
cytoplasm
RAP1
YDL130WRPP1Bprotein biosynthesis, translational elongation ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAL4, RAP1, RFX1
YLR146CSPE4pantothenate biosynthesis, spermine biosynthesis ->
biosynthesis, amine metabolism, coenzymes and prosthetic group metabolism, amino acid and derivative metabolism, secondary metabolism
spermine synthase activity ->
transferase activity\, transferring alkyl or aryl (other than methyl) groups
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YLR061WRPL22Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
BAS1, FHL1, HIR1, PDR1, RAP1, RCS1, RME1, ZAP1
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
carbon-oxygen lyase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YPL090CRPS6Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, INO4, RAP1, YAP5
Main:biosynthesis (0.80)structural constituent of ribosome (0.60)cytoplasm (1.00)RAP1 (0.89)
Score:0.670.361.000.861
P-value:2.315E-02 (biosynthesis)4.690E-04 (structural constituent of ribosome)2.195E-04 (cytosolic ribosome (sensu Eukarya))2.612E-06 (RAP1)

CSRE(1) AND RAP1(1) AND SWI5(1) => SimExpr(YLR344W) : 5

RAP1(1) AND ALPHA1'(1) AND SCB(1) => SimExpr(YLR344W) : 5

    EXPR: (0.069) ALPHA1' (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.053)

ORFSYMBOLPFCTF
YOR369CRPS12protein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, RAP1
YBR118WTEF2translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
FHL1, RAP1
YLR344WRPL26Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
YHL033CRPL8Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.80)ribosome (1.00)FHL1 (1.00)
Score:1.000.601.001.000
P-value:5.595E-04 (protein biosynthesis)1.631E-03 (structural constituent of ribosome)1.672E-04 (ribosome)8.831E-06 (FHL1)

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YLR344W) : 8

    EXPR: (0.076) SFF' (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.050)

ORFSYMBOLPFCTF
YOR369CRPS12protein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, RAP1
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YBR118WTEF2translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
FHL1, RAP1
YLR344WRPL26Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, MIG1
YHL033CRPL8Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.75)ribosome (1.00)FHL1 (0.88)
Score:1.000.571.000.750
P-value:3.588E-06 (protein biosynthesis)8.006E-05 (structural constituent of ribosome)1.941E-07 (ribosome)3.438E-07 (FHL1)

MCB(1) AND SCB(1) => SimExpr(YCR065W) OR SimExpr(other) : 10 4

    EXPR: (0.106) MCB (P < 0.070) SCB (P < 0.000)

ORFSYMBOLPFCTF
YNL082WPMS1mismatch repair, meiosis ->
DNA metabolism, cell proliferation
ATPase activity, ATP binding, DNA binding ->
purine nucleotide binding, DNA binding, hydrolase activity\, acting on acid anhydrides
nuclear chromosome ->
chromosome, nucleus
MTH1
YGL225WVRG4nucleotide-sugar transport, N-linked glycosylation, lipid glycosylation ->
transport, biosynthesis, lipid metabolism, protein metabolism
nucleotide-sugar transporter activity ->
nucleotide-sugar transporter activity
Golgi apparatus ->
cytoplasm
YOL006CTOP1negative regulation of recombination within rDNA repeats, DNA topological change, DNA strand elongation, chromatin assembly/disassembly, regulation of transcription from Pol II promoter, RNA elongation from Pol II promoter, mitotic chromosome condensation, nuclear migration ->
cell organization and biogenesis, cell cycle, mitotic cell cycle, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA topoisomerase type I activity ->
other isomerase activity
nucleus ->
nucleus
REB1
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cell organization and biogenesis, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
YDR211WGCD6translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity ->
translation factor activity\, nucleic acid binding
ribosome, eukaryotic translation initiation factor 2B complex ->
cytoplasm, ribonucleoprotein complex
HSF1
|YDR297W|SUR2sphingolipid metabolism, sphingolipid biosynthesis ->
lipid metabolism, biosynthesis
sphingosine hydroxylase activity ->
sphingosine hydroxylase activity
endoplasmic reticulum ->
cytoplasm
CBF1, MTH1
|YKL042W|SPC42microtubule nucleation, spindle pole body duplication (sensu Saccharomyces) ->
cell organization and biogenesis, cell proliferation
structural constituent of cytoskeleton ->
structural constituent of cytoskeleton
intermediate layer of spindle pole body, central plaque of spindle pole body ->
cytoplasm
YBL035CPOL12DNA replication\, priming, DNA replication initiation, lagging strand elongation ->
cell proliferation, cell cycle, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
alpha DNA polymerase activity ->
transferase activity\, transferring phosphorus-containing groups
alpha DNA polymerase\:primase complex ->
nucleus
MBP1
YIL066CRNR3DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
oxidoreductase activity\, acting on CH2 groups
cytoplasm ->
cytoplasm
RFX1, STB1
YBR088CPOL30leading strand elongation, lagging strand elongation, mutagenesis, base-excision repair, nucleotide-excision repair, mismatch repair, postreplication repair ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, mitotic cell cycle
DNA polymerase processivity factor activity ->
transferase activity\, transferring phosphorus-containing groups
replication fork ->
nucleus
|YGR085C|RPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
|YML012W|ERV25ER to Golgi transport ->
transport, vesicle-mediated transport
COPII-coated vesicle ->
cytoplasm
ABF1
YER070WRNR1DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
oxidoreductase activity\, acting on CH2 groups
cytoplasm ->
cytoplasm
FKH2, MBP1, REB1, SWI4, SWI6
YDR052CDBF4DNA replication initiation, regulation of DNA replication, protein amino acid phosphorylation ->
phosphorus metabolism, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, protein metabolism
protein serine/threonine kinase activity ->
transferase activity\, transferring phosphorus-containing groups
nucleoplasm ->
nucleus
IME4, NRG1
Main:cell proliferation (0.57)transferase activity\, transferring phosphorus-containing groups (0.23)cytoplasm (0.57)MBP1 (0.27)
Score:0.530.050.470.127
P-value:4.340E-06 (DNA replication and chromosome cycle)7.486E-03 (oxidoreductase activity\, acting on CH2 groups\, disulfide as acceptor)4.996E-02 (replication fork)1.745E-01 (MBP1)

ALPHA1'(1) AND MCB(1) AND SCB(1) => SimExpr(YCR065W) OR SimExpr(other) : 5 2

    EXPR: (0.090) ALPHA1' (P < 0.000) MCB (P < 0.018) SCB (P < 0.000)

ORFSYMBOLPFCTF
YGL225WVRG4nucleotide-sugar transport, N-linked glycosylation, lipid glycosylation ->
transport, biosynthesis, lipid metabolism, protein metabolism
nucleotide-sugar transporter activity ->
nucleotide-sugar transporter activity
Golgi apparatus ->
cytoplasm
YOL006CTOP1negative regulation of recombination within rDNA repeats, DNA topological change, DNA strand elongation, chromatin assembly/disassembly, regulation of transcription from Pol II promoter, RNA elongation from Pol II promoter, mitotic chromosome condensation, nuclear migration ->
cell organization and biogenesis, cell cycle, mitotic cell cycle, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA topoisomerase type I activity ->
DNA topoisomerase type I activity
nucleus ->
nucleus
REB1
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cell organization and biogenesis, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
|YDR297W|SUR2sphingolipid metabolism, sphingolipid biosynthesis ->
lipid metabolism, biosynthesis
sphingosine hydroxylase activity ->
sphingosine hydroxylase activity
endoplasmic reticulum ->
cytoplasm
CBF1, MTH1
|YKL042W|SPC42microtubule nucleation, spindle pole body duplication (sensu Saccharomyces) ->
cell organization and biogenesis, cell proliferation
structural constituent of cytoskeleton ->
structural constituent of cytoskeleton
intermediate layer of spindle pole body, central plaque of spindle pole body ->
cytoplasm
YIL066CRNR3DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
ribonucleoside-diphosphate reductase activity
cytoplasm ->
cytoplasm
RFX1, STB1
YER070WRNR1DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
ribonucleoside-diphosphate reductase activity
cytoplasm ->
cytoplasm
FKH2, MBP1, REB1, SWI4, SWI6
Main:cell proliferation (0.57)ribonucleoside-diphosphate reductase activity (0.29)cytoplasm (0.71)SWI4 STB1 REB1 MBP1 (0.40)
Score:0.520.050.520.300
P-value:6.514E-03 (DNA replication and chromosome cycle)8.678E-04 (oxidoreductase activity\, acting on CH2 groups\, disulfide as acceptor)2.431E+00 (intracellular)5.032E-02 (STB1)

ALPHA1(1) AND ALPHA1'(1) AND MCB(1) => SimExpr(YCR065W) OR SimExpr(other) : 5 2

    EXPR: (0.096) ALPHA1' (P < 0.000) MCB (P < 0.043) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YGL225WVRG4nucleotide-sugar transport, N-linked glycosylation, lipid glycosylation ->
transport, biosynthesis, lipid metabolism, protein metabolism
nucleotide-sugar transporter activity ->
nucleotide-sugar transporter activity
Golgi apparatus ->
cytoplasm
YDR097CMSH6mismatch repair ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, cell proliferation
ATPase activity, ATP binding, DNA binding ->
ATPase activity, ATP binding, DNA binding
nucleus ->
nucleus
DOT6, MBP1, SWI6
YOL006CTOP1negative regulation of recombination within rDNA repeats, DNA topological change, DNA strand elongation, chromatin assembly/disassembly, regulation of transcription from Pol II promoter, RNA elongation from Pol II promoter, mitotic chromosome condensation, nuclear migration ->
cell organization and biogenesis, cell cycle, mitotic cell cycle, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA topoisomerase type I activity ->
DNA topoisomerase type I activity
nucleus ->
nucleus
REB1
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cell organization and biogenesis, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
|YLR430W|SEN135S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA helicase activity, ATPase activity
nucleolus ->
nucleus
ARG80, GTS1, HAP5, RTG3, SIP4
|YER047C|SAP1MSS11
YNL233WBNI4cytokinesis ->
cell proliferation
protein binding ->
protein binding
contractile ring (sensu Saccharomyces) ->
site of polarized growth (sensu Fungi), cell cortex, cytoplasm
PHO4
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.67)ATPase activity (0.33)nucleus (0.67)MBP1 (0.33)
Score:0.530.070.470.067
P-value:1.178E-01 (cell proliferation)6.480E-01 (ATP binding)9.201E-01 (nucleus)3.556E-01 (MBP1)

MCM1(1) AND MCB(1) => SimExpr(YCR065W) : 6

    EXPR: (0.092) MCB (P < 0.032) MCM1 (P < 0.000)

ORFSYMBOLPFCTF
YGR109CCLB6regulation of CDK activity, G1/S transition of mitotic cell cycle, premeiotic DNA synthesis ->
cell cycle, mitotic cell cycle, DNA metabolism
cyclin-dependent protein kinase\, regulator activity ->
cyclin-dependent protein kinase\, regulator activity
MBP1, STB1, SWI4, SWI6
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cytoplasm organization and biogenesis, cell cycle, transcription
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
YDR309CGIC2axial budding, Rho protein signal transduction, establishment of cell polarity (sensu Saccharomyces) ->
budding, intracellular signaling cascade, cytoplasm organization and biogenesis
small GTPase regulatory/interacting protein activity ->
small GTPase regulatory/interacting protein activity
actin cap (sensu Saccharomyces), bud tip, shmoo tip, incipient bud site ->
cell cortex, site of polarized growth (sensu Fungi), incipient bud site, cytoplasm
ASH1, HSF1, MBP1, PHD1, RLM1, SKN7, STB1, STE12, SWI4, SWI6
YIL066CRNR3DNA replication ->
cell cycle, DNA metabolism
ribonucleoside-diphosphate reductase activity ->
ribonucleoside-diphosphate reductase activity
cytoplasm ->
cytoplasm
RFX1, STB1
YNR028WCPR8peptidyl-prolyl cis-trans isomerase activity ->
peptidyl-prolyl cis-trans isomerase activity
ASH1, DIG1, MCM1
YGL163CRAD54double-strand break repair via synthesis-dependent strand annealing, heteroduplex formation, double-strand break repair via break-induced replication, telomerase-independent telomere maintenance, double-strand break repair via single-strand annealing, chromatin modeling ->
mating-type switching/recombination, chromosome organization and biogenesis (sensu Eukarya), DNA repair, response to DNA damage, DNA metabolism
DNA supercoiling activity, DNA dependent ATPase activity ->
DNA supercoiling activity, DNA dependent ATPase activity
nucleus ->
nucleus
Main:DNA metabolism (0.60)peptidyl-prolyl cis-trans isomerase activity (0.17)cytoplasm (0.50)STB1 (0.80)
Score:0.600.000.330.800
P-value:2.557E-01 (DNA metabolism)1.199E+00 (enzyme activity)3.742E+00 (nucleus)5.347E-06 (STB1)

STE12(1) AND MCB(1) => SimExpr(YCR065W) : 5

    EXPR: (0.085) STE12 (P < 0.000) MCB (P < 0.013)

ORFSYMBOLPFCTF
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cell organization and biogenesis, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
YDR309CGIC2axial budding, Rho protein signal transduction, establishment of cell polarity (sensu Saccharomyces) ->
asexual reproduction, signal transduction, cell organization and biogenesis
small GTPase regulatory/interacting protein activity ->
small GTPase regulatory/interacting protein activity
actin cap (sensu Saccharomyces), bud tip, shmoo tip, incipient bud site ->
cell cortex, site of polarized growth (sensu Fungi), incipient bud site, cytoplasm
ASH1, HSF1, MBP1, PHD1, RLM1, SKN7, STB1, STE12, SWI4, SWI6
YJR043CPOL32leading strand elongation, lagging strand elongation, mutagenesis, base-excision repair, nucleotide-excision repair, mismatch repair, postreplication repair ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, mitotic cell cycle
delta DNA polymerase activity ->
delta DNA polymerase activity
delta DNA polymerase complex, nucleus ->
cytoplasm, nucleus
MOT3, RTS2
YNL233WBNI4cytokinesis ->
cell proliferation
protein binding ->
protein binding
contractile ring (sensu Saccharomyces) ->
site of polarized growth (sensu Fungi), cell cortex, cytoplasm
PHO4
YPR135WCTF4DNA dependent DNA replication, DNA repair ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, cell proliferation
DNA binding ->
DNA binding
nucleus ->
nucleus
BAS1, DIG1, FZF1
Main:cell proliferation (0.80)DNA binding (0.20)cytoplasm (0.60)SWI4 STB1 ASH1 HSF1 PHD1 MBP1 (0.40)
Score:0.700.000.600.100
P-value:1.957E-02 (cell proliferation)1.354E+00 (binding)5.936E-02 (cell cortex)2.046E-02 (ASH1)

HAP234(1) AND ALPHA1'(1) => SimExpr(YBL099W) OR SimExpr(other) : 9 4

    EXPR: (0.111) ALPHA1' (P < 0.000) HAP234 (P < 0.122)

ORFSYMBOLPFCTF
YLR304CACO1tricarboxylic acid cycle, citrate metabolism, glutamate biosynthesis, propionate metabolism ->
carbohydrate metabolism, amine metabolism, organic acid metabolism, energy pathways, amino acid and derivative metabolism, biosynthesis
aconitate hydratase activity ->
aconitate hydratase activity
cytosol, mitochondrial matrix ->
cytoplasm
CIN5, YAP6
YOR136WIDH2tricarboxylic acid cycle, isocitrate metabolism, glutamate biosynthesis ->
carbohydrate metabolism, amine metabolism, organic acid metabolism, energy pathways, amino acid and derivative metabolism, biosynthesis
isocitrate dehydrogenase (NAD+) activity ->
isocitrate dehydrogenase activity
mitochondrial matrix, mitochondrion ->
cytoplasm
MET4
|YCR069W|CPR4peptidyl-prolyl cis-trans isomerase activity ->
peptidyl-prolyl cis-trans isomerase activity
membrane ->
membrane
SKO1
|YBR118W|TEF2translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YLR038CCOX12cytochrome c oxidase biogenesis ->
protein metabolism
cytochrome c oxidase activity ->
heme-copper terminal oxidase activity, oxidoreductase activity\, acting on heme group of donors\, oxygen as acceptor, primary active transporter activity, hydrogen ion transporter activity
respiratory chain complex IV (sensu Eukarya) ->
cytoplasm, respiratory chain complex IV, membrane
HAP4
YEL024WRIP1aerobic respiration, oxidative phosphorylation\, ubiquinone to cytochrome c ->
energy pathways, electron transport, phosphorus metabolism
ubiquinol-cytochrome c reductase activity ->
oxidoreductase activity\, acting on diphenols and related substances as donors\, cytochrome as acceptor, primary active transporter activity, hydrogen ion transporter activity
respiratory chain complex III (sensu Eukarya) ->
cytoplasm, respiratory chain complex III, membrane
CBF1, HAP2, HAP4
|YMR280C|CAT8gluconeogenesis, positive regulation of transcription from Pol II promoter ->
alcohol metabolism, monosaccharide metabolism, carbohydrate metabolism, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, biosynthesis, energy pathways
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ABF1, REB1
YBL099WATP1ATP synthesis coupled proton transport ->
transport
hydrogen-transporting ATP synthase activity ->
hydrogen ion transporter activity
proton-transporting ATP synthase\, catalytic core (sensu Eukarya) ->
cytoplasm, proton-transporting ATP synthase complex, membrane
HAP4, ROX1
YPR145WASN1asparagine biosynthesis ->
amine metabolism, amino acid and derivative metabolism, organic acid metabolism, biosynthesis
asparagine synthase (glutamine-hydrolyzing) activity ->
asparagine synthase (glutamine-hydrolyzing) activity
DAL81, GCN4, GLN3, MET4, RAP1, SUM1
YKL141WSDH3oxidative phosphorylation\, succinate to ubiquinone, tricarboxylic acid cycle ->
electron transport, carbohydrate metabolism, phosphorus metabolism, energy pathways
succinate dehydrogenase activity ->
succinate dehydrogenase activity
respiratory chain complex II (sensu Eukarya) ->
cytoplasm, respiratory chain complex II, succinate dehydrogenase complex (ubiquinone), membrane
YML028WTSA1response to oxidative stress, regulation of redox homeostasis ->
oxygen and reactive oxygen species metabolism, cell homeostasis, response to biotic stimulus
thioredoxin peroxidase activity ->
thioredoxin peroxidase activity
cytoplasm ->
cytoplasm
MBP1, NDD1, SKN7, YAP1
YOR187WTUF1translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
mitochondrial matrix, mitochondrial ribosome ->
cytoplasm, ribonucleoprotein complex
HAP4, REB1
|YHR018C|ARG4arginine biosynthesis ->
amine metabolism, nitrogen metabolism, amino acid and derivative metabolism, organic acid metabolism, biosynthesis
argininosuccinate lyase activity ->
argininosuccinate lyase activity
cytosol ->
cytoplasm
GCN4, INO2
Main:biosynthesis (0.58)hydrogen ion transporter activity (0.23)cytoplasm (0.83)HAP4 (0.33)
Score:0.450.050.740.152
P-value:1.352E-03 (tricarboxylic acid cycle)2.089E-02 (hydrogen ion transporter activity)5.530E-03 (mitochondrial electron transport chain)2.211E-03 (HAP4)

RAP1(1) => SimExpr(other) OR SimExpr(YGR085C) : 16 35

RAP1(1) AND SCB(1) => SimExpr(YGR085C) OR SimExpr(other) : 8 1

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YGR085C) : 8

RAP1(1) AND ALPHA1(1) AND SCB(1) => SimExpr(YGR085C) : 5

    EXPR: (0.059) SCB (P < 0.000) RAP1 (P < 0.074) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, RAP1
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, MIG1
YHL033CRPL8Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.80)ribosome (1.00)FHL1 (0.80)
Score:1.000.601.000.600
P-value:1.119E-03 (protein biosynthesis)1.398E-03 (structural constituent of ribosome)1.008E-04 (cytosolic large ribosomal subunit (sensu Eukarya))7.160E-04 (FHL1)

mRRPE(1) AND PAC(1) => SimExpr(YOR095C) OR SimExpr(other) : 26 3

SFF'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YOR095C) OR SimExpr(other) : 9 2

    EXPR: (0.094) SFF' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.015)

ORFSYMBOLPFCTF
|YGL016W|KAP122protein-nucleus import, response to drug ->
response to abiotic stimulus, protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore ->
cytoplasm, nucleus, integral to membrane, endomembrane system
MSN2
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YJL138CTIF2translational initiation, regulation of translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
translation factor activity\, nucleic acid binding, RNA binding
ribosome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
PHD1
YER110CKAP123protein-nucleus import ->
protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YNL112WDBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Fungi)
|YNL292W|PUS4tRNA modification ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pseudouridylate synthase activity ->
carbon-oxygen lyase activity
mitochondrion, nucleus ->
cytoplasm, nucleus
RCS1
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
YGL078CDBP3ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.40)RNA binding (0.40)cytoplasm (0.60)FKH2 (0.25)
Score:0.310.220.640.036
P-value:1.087E-02 (35S primary transcript processing)9.534E-05 (RNA helicase activity)6.271E-02 (nucleolus)5.897E-01 (FKH2)

RAP1(1) AND SCB(1) => SimExpr(YBR118W) OR SimExpr(other) : 8 1

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YBR118W) : 8

RAP1(1) AND ALPHA1'(1) AND SCB(1) => SimExpr(YBR118W) : 5

RAP1(1) AND SWI5(1) => SimExpr(other) OR SimExpr(YER074W) : 6 14

RAP1(1) AND SWI5(1) AND MCM1'(1) => SimExpr(YER074W) OR SimExpr(other) : 6 1

RAP1(1) AND ALPHA1(1) AND SWI5(1) => SimExpr(other) OR SimExpr(YER074W) : 2 6

    EXPR: (0.106) SWI5 (P < 0.002) RAP1 (P < 0.729) ALPHA1 (P < 0.001)

ORFSYMBOLPFCTF
|YMR013C|SEC59protein-ER targeting, protein amino acid glycosylation ->
cytoplasm organization and biogenesis, macromolecule biosynthesis, intracellular transport, secretory pathway, protein modification, glycoprotein metabolism, protein metabolism, protein transport
dolichol kinase activity ->
dolichol kinase activity
membrane ->
membrane
FHL1, NDD1, RAP1, RLM1, RME1
YKL006WRPL14Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YBL087CRPL23Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YKR092CSRP40nucleocytoplasmic transport ->
intracellular transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YER074WRPS24Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YOR213CSAS5chromatin silencing at telomere ->
nuclear organization and biogenesis, gene silencing, DNA metabolism, transcription
acetyltransferase activity ->
acetyltransferase activity
nuclear chromosome\, telomeric region, nuclear chromatin ->
chromosome, nuclear chromosome
GRF10(Pho2), SUM1
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
DNA recombination, cell cycle, catabolism, DNA metabolism
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
endonuclease activity, 3'-5' exonuclease activity, protein binding
nucleus ->
nucleus
RAP1
YLR249WYEF3translational elongation ->
macromolecule biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:protein metabolism (0.62)structural constituent of ribosome (0.38)cytoplasm (0.50)RAP1 (0.75)
Score:0.430.110.250.571
P-value:3.994E-02 (protein biosynthesis)1.967E-01 (structural constituent of ribosome)8.363E-02 (ribosome)2.439E-04 (RAP1)

RAP1(1) => SimExpr(other) OR SimExpr(YGL076C) : 15 36

RAP1(1) AND SCB(1) => SimExpr(YHL033C) OR SimExpr(other) : 8 1

RAP1(1) AND ALPHA1'(1) AND SCB(1) => SimExpr(YHL033C) : 5

RAP1(1) AND ALPHA1(1) AND SCB(1) => SimExpr(YHL033C) : 5

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YHL033C) : 8

RAP1(1) => SimExpr(other) OR SimExpr(YOR369C) : 16 35

RAP1(1) AND SFF(1) => SimExpr(other) OR SimExpr(YOR369C) : 9 22

    EXPR: (0.093) SFF (P < 0.000) RAP1 (P < 0.313)

ORFSYMBOLPFCTF
YOL121CRPS19Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
AZF1, FHL1, GCR1, GCR2, HAL9, MET31, MOT3, PDR1, RAP1, ROX1, RPH1, SMP1, YAP6, ZAP1
|YLR452C|SST2signal transduction, adaptation to pheromone during conjugation with cellular fusion ->
signal transduction, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
GTPase activator activity ->
GTPase activator activity
plasma membrane ->
membrane
DIG1, FHL1, RAP1, STE12
|YLR208W|SEC13nonselective vesicle assembly, ER to Golgi transport, ER-associated protein catabolism ->
macromolecule catabolism, transport, protein metabolism
cytoplasm, COPII vesicle coat, nuclear pore, extrinsic to plasma membrane ->
nucleus, cytoplasm, membrane coat, membrane
YKR057WRPS21Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ABF1, FHL1
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YLR441CRPS1Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, YAP5
|YLR146C|SPE4pantothenate biosynthesis, spermine biosynthesis ->
biosynthesis, amine metabolism, coenzymes and prosthetic group metabolism, amino acid and derivative metabolism, secondary metabolism
spermine synthase activity ->
spermine synthase activity
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YJR123WRPS5protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GRF10(Pho2), HSF1, MSN4, YAP1
YOR369CRPS12protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
|YDR406W|PDR15transport ->
transport
ATP-binding cassette (ABC) transporter activity ->
ATPase activity\, coupled to transmembrane movement of substances, P-P-bond-hydrolysis-driven transporter activity
integral to membrane ->
membrane
YLR061WRPL22Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
BAS1, FHL1, HIR1, PDR1, RAP1, RCS1, RME1, ZAP1
YDR418WRPL12Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, SMP1
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
|YMR231W|PEP5nonselective vesicle docking, homotypic vacuole fusion (non-autophagic), Golgi to endosome transport, late endosome to vacuole transport ->
cell organization and biogenesis, transport, vesicle-mediated transport
vacuolar membrane (sensu Fungi) ->
cytoplasm, vacuole
ARG81, DOT6, HAL9, HAP2, MCM1, YAP1
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
phosphopyruvate hydratase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YKR092CSRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YJR139CHOM6homoserine biosynthesis, methionine metabolism, threonine metabolism ->
amine metabolism, sulfur metabolism, biosynthesis, amino acid and derivative metabolism, organic acid metabolism
homoserine dehydrogenase activity ->
homoserine dehydrogenase activity
HMS1, RAP1
|YBR295W|PCA1copper ion homeostasis ->
cell homeostasis
P-type ATPase activity ->
ATPase activity\, coupled to transmembrane movement of substances, P-P-bond-hydrolysis-driven transporter activity, cation transporter activity
membrane ->
membrane
GAL4, SMP1
YKL180WRPL17Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
|YBL093C|ROX3transcription from Pol II promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase II transcription mediator activity ->
RNA polymerase II transcription mediator activity
mediator complex, nucleus ->
nucleus
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
DNA metabolism, cell proliferation, catabolism
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
endonuclease activity, 3'-5' exonuclease activity, protein binding
nucleus ->
nucleus
RAP1
YHL033CRPL8Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (0.74)structural constituent of ribosome (0.62)cytoplasm (0.79)FHL1 (0.71)
Score:0.610.380.650.725
P-value:9.552E-08 (protein biosynthesis)1.976E-11 (structural constituent of ribosome)2.499E-13 (cytosolic ribosome (sensu Eukarya))1.196E-16 (FHL1)

RAP1(1) AND SFF'(1) => SimExpr(other) OR SimExpr(YOR369C) : 12 27

    EXPR: (0.098) SFF' (P < 0.000) RAP1 (P < 0.534)

ORFSYMBOLPFCTF
|YMR013C|SEC59protein-ER targeting, protein amino acid glycosylation ->
cell organization and biogenesis, biosynthesis, protein modification, protein metabolism, transport
dolichol kinase activity ->
dolichol kinase activity
membrane ->
membrane
FHL1, NDD1, RAP1, RLM1, RME1
YOL121CRPS19Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
AZF1, FHL1, GCR1, GCR2, HAL9, MET31, MOT3, PDR1, RAP1, ROX1, RPH1, SMP1, YAP6, ZAP1
|YLR452C|SST2signal transduction, adaptation to pheromone during conjugation with cellular fusion ->
signal transduction, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
GTPase activator activity ->
GTPase activator activity
plasma membrane ->
membrane
DIG1, FHL1, RAP1, STE12
|YBL022C|PIM1proteolysis and peptidolysis, response to heat ->
catabolism, response to abiotic stimulus, protein metabolism
ATP-dependent peptidase activity ->
ATP-dependent peptidase activity
mitochondrial matrix ->
cytoplasm
RAP1
|YBR117C|TKL2pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
transketolase activity ->
transketolase activity
FHL1, RAP1
YKR057WRPS21Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ABF1, FHL1
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YGL147CRPL9Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MBP1, RAP1, SWI4
YLR441CRPS1Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, YAP5
|YLR146C|SPE4pantothenate biosynthesis, spermine biosynthesis ->
biosynthesis, amine metabolism, coenzymes and prosthetic group metabolism, amino acid and derivative metabolism, secondary metabolism
spermine synthase activity ->
spermine synthase activity
YGR214WRPS0Aprotein biosynthesis, ribosomal small subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YJR123WRPS5protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GRF10(Pho2), HSF1, MSN4, YAP1
YDL136WRPL35Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, INO4, MSS11, RAP1
YOR369CRPS12protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
|YDR406W|PDR15transport ->
transport
ATP-binding cassette (ABC) transporter activity ->
ATPase activity\, coupled to transmembrane movement of substances, P-P-bond-hydrolysis-driven transporter activity
integral to membrane ->
membrane
YBR118WTEF2translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YLR061WRPL22Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
BAS1, FHL1, HIR1, PDR1, RAP1, RCS1, RME1, ZAP1
YDR418WRPL12Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, SMP1
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
|YMR231W|PEP5nonselective vesicle docking, homotypic vacuole fusion (non-autophagic), Golgi to endosome transport, late endosome to vacuole transport ->
cell organization and biogenesis, transport, vesicle-mediated transport
vacuolar membrane (sensu Fungi) ->
cytoplasm, vacuole
ARG81, DOT6, HAL9, HAP2, MCM1, YAP1
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
phosphopyruvate hydratase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YKR092CSRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YGL076CRPL7Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YBR048WRPS11Bprotein biosynthesis, ribosomal small subunit assembly and maintenance, regulation of translational fidelity ->
cell organization and biogenesis, biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
GAL4, HAP4, LEU3, MET31, MSN1
YJR139CHOM6homoserine biosynthesis, methionine metabolism, threonine metabolism ->
amine metabolism, sulfur metabolism, biosynthesis, amino acid and derivative metabolism, organic acid metabolism
homoserine dehydrogenase activity ->
homoserine dehydrogenase activity
HMS1, RAP1
|YBR295W|PCA1copper ion homeostasis ->
cell homeostasis
P-type ATPase activity ->
ATPase activity\, coupled to transmembrane movement of substances, P-P-bond-hydrolysis-driven transporter activity, cation transporter activity
membrane ->
membrane
GAL4, SMP1
YKL180WRPL17Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
|YBL093C|ROX3transcription from Pol II promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase II transcription mediator activity ->
RNA polymerase II transcription mediator activity
mediator complex, nucleus ->
nucleus
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
DNA metabolism, cell proliferation, catabolism
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
endonuclease activity, 3'-5' exonuclease activity, protein binding
nucleus ->
nucleus
RAP1
|YMR193W|MRPL24protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
mitochondrial large ribosomal subunit ->
cytoplasm, ribonucleoprotein complex
ARO80, HAP4, HAP5, LEU3, MET31, RTG1, RTG3, STE12, STP1, UGA3
YHL033CRPL8Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
Main:biosynthesis (0.77)structural constituent of ribosome (0.61)cytoplasm (0.81)RAP1 FHL1 (0.69)
Score:0.650.360.660.692
P-value:4.025E-12 (protein biosynthesis)4.923E-15 (structural constituent of ribosome)3.389E-16 (cytosolic ribosome (sensu Eukarya))3.885E-21 (FHL1)

RAP1(1) AND SWI5(1) => SimExpr(other) OR SimExpr(YOR369C) : 6 14

RAP1(1) AND SCB(1) => SimExpr(YOR369C) OR SimExpr(other) : 8 1

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YOR369C) : 8

RAP1(1) AND ALPHA1'(1) AND SCB(1) => SimExpr(YOR369C) : 5

RAP1(1) AND mRRPE(1) => SimExpr(other) OR SimExpr(YDL130W) : 2 5

    EXPR: (0.098) mRRPE (P < 0.004) RAP1 (P < 0.375)

ORFSYMBOLPFCTF
|YMR013C|SEC59protein-ER targeting, protein amino acid glycosylation ->
cell organization and biogenesis, biosynthesis, protein modification, protein metabolism, transport
dolichol kinase activity ->
dolichol kinase activity
membrane ->
membrane
FHL1, NDD1, RAP1, RLM1, RME1
YOL121CRPS19Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
AZF1, FHL1, GCR1, GCR2, HAL9, MET31, MOT3, PDR1, RAP1, ROX1, RPH1, SMP1, YAP6, ZAP1
YDL130WRPP1Bprotein biosynthesis, translational elongation ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAL4, RAP1, RFX1
|YLR146C|SPE4pantothenate biosynthesis, spermine biosynthesis ->
biosynthesis, amine metabolism, coenzymes and prosthetic group metabolism, amino acid and derivative metabolism, secondary metabolism
spermine synthase activity ->
spermine synthase activity
YGL030WRPL30protein biosynthesis, rRNA processing, mRNA splicing, regulation of translation ->
cell organization and biogenesis, biosynthesis, transcription, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytosol, cytoplasm, ribosome
FHL1, GAT3, RAP1, SFP1
YBR048WRPS11Bprotein biosynthesis, ribosomal small subunit assembly and maintenance, regulation of translational fidelity ->
cell organization and biogenesis, biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
GAL4, HAP4, LEU3, MET31, MSN1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
Main:biosynthesis (1.00)structural constituent of ribosome (0.57)ribosome (0.83)RAP1 FHL1 (0.67)
Score:1.000.290.670.533
P-value:9.347E-04 (protein biosynthesis)8.551E-03 (structural constituent of ribosome)3.979E-03 (ribosome)1.076E-02 (FHL1)

RAP1(1) => SimExpr(other) OR SimExpr(YPL131W) : 16 35

RAP1(1) AND SCB(1) => SimExpr(YPL131W) OR SimExpr(other) : 8 1

RAP1(1) AND ALPHA1(1) AND SCB(1) => SimExpr(YPL131W) : 5

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YPL131W) : 8

RAP1(1) AND ALPHA1'(1) AND SCB(1) => SimExpr(YPL131W) : 5

RAP1(1) => SimExpr(other) OR SimExpr(YBR181C) : 16 35

RAP1(1) AND SWI5(1) => SimExpr(other) OR SimExpr(YBR181C) : 6 14

RAP1(1) => SimExpr(other) OR SimExpr(YGL030W) : 15 36

RAP1(1) AND mRRPE(1) => SimExpr(other) OR SimExpr(YGL030W) : 1 6

RAP1(1) AND ALPHA1(1) AND SFF(1) => SimExpr(other) OR SimExpr(YLR061W) : 4 13

    EXPR: (0.093) SFF (P < 0.000) RAP1 (P < 0.452) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YKR057WRPS21Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ABF1, FHL1
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YLR061WRPL22Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
BAS1, FHL1, HIR1, PDR1, RAP1, RCS1, RME1, ZAP1
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
|YMR231W|PEP5nonselective vesicle docking, homotypic vacuole fusion (non-autophagic), Golgi to endosome transport, late endosome to vacuole transport ->
cell organization and biogenesis, transport, vesicle-mediated transport
vacuolar membrane (sensu Fungi) ->
cytoplasm, vacuole
ARG81, DOT6, HAL9, HAP2, MCM1, YAP1
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
phosphopyruvate hydratase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YKR092CSRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YJR139CHOM6homoserine biosynthesis, methionine metabolism, threonine metabolism ->
amine metabolism, sulfur metabolism, biosynthesis, amino acid and derivative metabolism, organic acid metabolism
homoserine dehydrogenase activity ->
homoserine dehydrogenase activity
HMS1, RAP1
YKL180WRPL17Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
|YBL093C|ROX3transcription from Pol II promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase II transcription mediator activity ->
RNA polymerase II transcription mediator activity
mediator complex, nucleus ->
nucleus
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
DNA metabolism, cell proliferation, catabolism
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
endonuclease activity, 3'-5' exonuclease activity, protein binding
nucleus ->
nucleus
RAP1
YHL033CRPL8Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:biosynthesis (0.76)structural constituent of ribosome (0.56)cytoplasm (0.81)RAP1 (0.65)
Score:0.610.300.680.603
P-value:1.244E-03 (protein biosynthesis)1.776E-05 (structural constituent of ribosome)5.236E-06 (cytosolic ribosome (sensu Eukarya))2.239E-07 (FHL1)

RAP1(1) => SimExpr(other) OR SimExpr(YOL121C) : 15 36

RAP1(1) AND SFF(1) => SimExpr(other) OR SimExpr(YOL121C) : 8 23

RAP1(1) AND mRRPE(1) => SimExpr(other) OR SimExpr(YOL121C) : 1 6

RAP1(1) => SimExpr(other) OR SimExpr(YKL006W) : 15 36

RAP1(1) AND SWI5(1) => SimExpr(other) OR SimExpr(YKL006W) : 6 14

RAP1(1) AND MCM1'(1) => SimExpr(other) OR SimExpr(YKL006W) : 5 16

RAP1(1) AND ALPHA1(1) => SimExpr(other) OR SimExpr(YKL006W) : 7 17

    EXPR: (0.099) RAP1 (P < 0.739) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
|YMR013C|SEC59protein-ER targeting, protein amino acid glycosylation ->
cell organization and biogenesis, biosynthesis, protein modification, protein metabolism, transport
dolichol kinase activity ->
dolichol kinase activity
membrane ->
membrane
FHL1, NDD1, RAP1, RLM1, RME1
|YBR117C|TKL2pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
transketolase activity ->
transketolase activity
FHL1, RAP1
YKR057WRPS21Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ABF1, FHL1
YDL130WRPP1Bprotein biosynthesis, translational elongation ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAL4, RAP1, RFX1
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YLR061WRPL22Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
BAS1, FHL1, HIR1, PDR1, RAP1, RCS1, RME1, ZAP1
YKL152CGPM1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphoglycerate mutase activity ->
phosphoglycerate mutase activity
cytosol ->
cytoplasm
GCR1, GCR2, HSF1, RAP1
|YMR231W|PEP5nonselective vesicle docking, homotypic vacuole fusion (non-autophagic), Golgi to endosome transport, late endosome to vacuole transport ->
cell organization and biogenesis, transport, vesicle-mediated transport
vacuolar membrane (sensu Fungi) ->
cytoplasm, vacuole
ARG81, DOT6, HAL9, HAP2, MCM1, YAP1
|YER047C|SAP1MSS11
YIL018WRPL2Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SWI5, YAP5
|YGR254W|ENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
phosphopyruvate hydratase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YKR092CSRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
YBR048WRPS11Bprotein biosynthesis, ribosomal small subunit assembly and maintenance, regulation of translational fidelity ->
cell organization and biogenesis, biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
GAL4, HAP4, LEU3, MET31, MSN1
YJR139CHOM6homoserine biosynthesis, methionine metabolism, threonine metabolism ->
amine metabolism, sulfur metabolism, biosynthesis, amino acid and derivative metabolism, organic acid metabolism
homoserine dehydrogenase activity ->
homoserine dehydrogenase activity
HMS1, RAP1
YKL180WRPL17Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya), cytoplasm ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
|YBL093C|ROX3transcription from Pol II promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA polymerase II transcription mediator activity ->
RNA polymerase II transcription mediator activity
mediator complex, nucleus ->
nucleus
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
YOR213CSAS5chromatin silencing at telomere ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
acetyltransferase activity ->
acetyltransferase activity
nuclear chromosome\, telomeric region, nuclear chromatin ->
chromosome, nuclear chromosome
GRF10(Pho2), SUM1
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
DNA metabolism, cell proliferation, catabolism
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
endonuclease activity, 3'-5' exonuclease activity, protein binding
nucleus ->
nucleus
RAP1
YHL033CRPL8Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:biosynthesis (0.74)structural constituent of ribosome (0.55)cytoplasm (0.76)RAP1 (0.62)
Score:0.600.290.590.536
P-value:3.678E-05 (protein biosynthesis)7.440E-07 (structural constituent of ribosome)1.053E-07 (cytosolic ribosome (sensu Eukarya))1.895E-10 (FHL1)

RAP1(1) AND SWI5(1) AND MCM1'(1) => SimExpr(YKL006W) OR SimExpr(other) : 6 1

RAP1(1) AND ALPHA1(1) AND SWI5(1) => SimExpr(other) OR SimExpr(YKL006W) : 2 6

RAP1(1) AND SFF(1) AND SWI5(1) => SimExpr(YLR441C) OR SimExpr(other) : 10 4

RAP1(1) AND mRRPE(1) => SimExpr(other) OR SimExpr(YBR048W) : 1 6

mRRPE(1) AND PAC(1) => SimExpr(YLR249W) OR SimExpr(other) : 27 2

mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YLR249W) OR SimExpr(other) : 10 1

mRRPE(1) AND SWI5(1) AND PAC(1) => SimExpr(YLR249W) OR SimExpr(other) : 6 1

    EXPR: (0.085) mRRPE (P < 0.003) SWI5 (P < 0.000) PAC (P < 0.022)

ORFSYMBOLPFCTF
|YGL016W|KAP122protein-nucleus import, response to drug ->
response to abiotic stimulus, protein metabolism, transport
protein carrier activity ->
protein carrier activity
cytoplasm, nuclear pore ->
cytoplasm, nucleus, integral to membrane, endomembrane system
MSN2
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
hypoxanthine phosphoribosyltransferase activity
YMR229CRRP5rRNA processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding, snoRNA binding ->
RNA binding, snoRNA binding
nucleolus, nucleolus organizer complex ->
nucleus
FHL1, RAP1
YJR002WMPP10rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex, nucleolus, nucleus ->
nucleus, ribonucleoprotein complex
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YHR089CGAR1rRNA modification, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
RNA binding ->
RNA binding
nucleolus, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
CBF1, FZF1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.71)RNA binding (0.40)nucleus (0.83)ABF1 (0.20)
Score:0.570.100.930.000
P-value:3.512E-05 (rRNA modification)4.289E-01 (nucleic acid binding)2.184E-05 (small nucleolar ribonucleoprotein complex)2.685E-01 (MSN2)

RAP1(1) AND SCB(1) => SimExpr(YLR249W) OR SimExpr(other) : 8 1

RAP1(1) AND mRRPE(1) => SimExpr(other) OR SimExpr(YLR249W) : 1 6

RAP1(1) AND ALPHA1(1) AND SFF(1) AND SWI5(1) => SimExpr(YLR249W) OR SimExpr(other) : 5 1

    EXPR: (0.088) SFF (P < 0.000) SWI5 (P < 0.000) RAP1 (P < 0.106) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YKL006WRPL14Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YKR092CSRP40nucleocytoplasmic transport ->
nucleocytoplasmic transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YER074WRPS24Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
|YMR224C|MRE11DNA repair, double-strand break repair via nonhomologous end-joining, meiotic DNA double-strand break formation, meiotic DNA double-strand break processing, double-strand break repair via break-induced replication ->
mitotic recombination, M phase, DNA catabolism, DNA recombination, DNA repair
endonuclease activity, 3'-5' exonuclease activity, protein binding ->
endonuclease activity, 3'-5' exonuclease activity, protein binding
nucleus ->
nucleus
RAP1
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:protein biosynthesis (0.67)structural constituent of ribosome (0.50)cytoplasm (0.67)RAP1 (0.83)
Score:0.400.200.470.667
P-value:5.607E-02 (protein biosynthesis)5.977E-02 (structural constituent of ribosome)2.140E-02 (ribosome)5.176E-04 (RAP1)

ALPHA1(1) AND mRRPE(1) AND PAC(1) => SimExpr(YLR249W) : 7

    EXPR: (0.092) mRRPE (P < 0.012) PAC (P < 0.045) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YMR229CRRP5rRNA processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding, snoRNA binding ->
RNA binding
nucleolus, nucleolus organizer complex ->
nucleus
FHL1, RAP1
YJR002WMPP10rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex, nucleolus, nucleus ->
nucleus, ribonucleoprotein complex
YHR128WFUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
CIN5
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
YMR239CRNT135S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonuclease III activity ->
hydrolase activity\, acting on ester bonds, RNA binding
nucleolus ->
nucleus
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.71)RNA binding (0.50)nucleus (0.80)RAP1 FHL1 (0.40)
Score:0.520.200.700.100
P-value:2.713E-04 (rRNA processing)7.534E-02 (RNA binding)1.842E-04 (nucleolus)5.170E-01 (USV1)

RAP1(1) AND ALPHA1(1) AND SCB(1) => SimExpr(YLR249W) : 5

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YLR249W) : 8

RAP1(1) AND mRRPE(1) => SimExpr(other) OR SimExpr(YLR146C) : 2 5

RAP1(1) AND SCB(1) => SimExpr(YBL087C) OR SimExpr(other) : 8 1

RAP1(1) AND ALPHA1(1) AND SCB(1) => SimExpr(YBL087C) : 5

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YBL087C) : 8

ndt80(MSE)(1) AND SWI5(1) => SimExpr(YPR122W) OR SimExpr(other) : 7 2

    EXPR: (0.108) ndt80(MSE) (P < 0.061) SWI5 (P < 0.000)

ORFSYMBOLPFCTF
YPR122WAXL1axial budding, bud site selection, conjugation with cellular fusion, peptide pheromone maturation ->
asexual reproduction, conjugation, protein metabolism, cell proliferation, cell organization and biogenesis, sexual reproduction
metalloendopeptidase activity ->
metalloendopeptidase activity
integral to membrane, bud neck, shmoo tip ->
integral to membrane, site of polarized growth (sensu Fungi)
CIN5
YER155CBEM2cell wall organization and biogenesis, bud growth, small GTPase mediated signal transduction, establishment of cell polarity (sensu Saccharomyces), actin cytoskeleton organization and biogenesis, microtubule cytoskeleton organization and biogenesis ->
asexual reproduction, signal transduction, cell organization and biogenesis, organelle organization and biogenesis
signal transducer activity ->
signal transducer activity
intracellular ->
intracellular
YGL116WCDC20mitotic spindle elongation, ubiquitin-dependent protein catabolism, mitotic metaphase/anaphase transition, mitotic chromosome segregation, cyclin catabolism ->
cell organization and biogenesis, catabolism, cell proliferation, cell cycle, protein metabolism
enzyme activator activity ->
enzyme activator activity
anaphase-promoting complex ->
intracellular
DIG1, FKH2, INO2, INO4, IXR1, MCM1, NDD1
YFR023WPES4DNA dependent DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DIG1, FKH1, FKH2, GLN3, HAP3, MCM1, MSN2, RIM101, RLM1, RTG3, STE12, SUM1, THI2, YAP1
YMR001CCDC5DNA dependent DNA replication, protein amino acid phosphorylation ->
phosphorus metabolism, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, protein metabolism
protein serine/threonine kinase activity ->
protein serine/threonine kinase activity
nucleus, spindle pole, bud neck ->
intracellular, site of polarized growth (sensu Fungi)
NDD1, REB1, SWI6
|YHL043W|ECM34cell wall organization and biogenesis ->
cell organization and biogenesis
YMR280CCAT8gluconeogenesis, positive regulation of transcription from Pol II promoter ->
alcohol metabolism, monosaccharide metabolism, carbohydrate metabolism, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, biosynthesis, energy pathways
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
intracellular
ABF1, REB1
YKL104CGFA1cell wall chitin biosynthesis ->
cell organization and biogenesis, biosynthesis, polysaccharide metabolism, carbohydrate metabolism
glucosamine-fructose-6-phosphate aminotransferase (isomerizing) activity ->
glucosamine-fructose-6-phosphate aminotransferase (isomerizing) activity
REB1
|YJR007W|SUI2translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity ->
translation initiation factor activity
ribosome, cytoplasm ->
intracellular
GLN3, HAP3, HIR1, RCS1
Main:cell organization and biogenesis (0.56)metalloendopeptidase activity (0.14)intracellular (0.83)REB1 (0.43)
Score:0.640.000.730.286
P-value:1.445E-01 (external encapsulating structure organization and biogenesis)1.561E+00 (transferase activity)1.713E-01 (bud neck)1.744E-01 (REB1)

ALPHA1(1) AND ndt80(MSE)(1) AND SWI5(1) => SimExpr(YPR122W) : 5

    EXPR: (0.090) ndt80(MSE) (P < 0.025) SWI5 (P < 0.000) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YPR122WAXL1axial budding, bud site selection, conjugation with cellular fusion, peptide pheromone maturation ->
asexual reproduction, conjugation, protein metabolism, cell proliferation, cell organization and biogenesis, sexual reproduction
metalloendopeptidase activity ->
metalloendopeptidase activity
integral to membrane, bud neck, shmoo tip ->
integral to membrane, site of polarized growth (sensu Fungi)
CIN5
YGL116WCDC20mitotic spindle elongation, ubiquitin-dependent protein catabolism, mitotic metaphase/anaphase transition, mitotic chromosome segregation, cyclin catabolism ->
cell organization and biogenesis, catabolism, cell proliferation, cell cycle, protein metabolism
enzyme activator activity ->
enzyme activator activity
anaphase-promoting complex ->
nucleus, ubiquitin ligase complex
DIG1, FKH2, INO2, INO4, IXR1, MCM1, NDD1
YFR023WPES4DNA dependent DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DIG1, FKH1, FKH2, GLN3, HAP3, MCM1, MSN2, RIM101, RLM1, RTG3, STE12, SUM1, THI2, YAP1
YMR001CCDC5DNA dependent DNA replication, protein amino acid phosphorylation ->
phosphorus metabolism, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, protein metabolism
protein serine/threonine kinase activity ->
protein serine/threonine kinase activity
nucleus, spindle pole, bud neck ->
nucleus, cytoplasm, site of polarized growth (sensu Fungi)
NDD1, REB1, SWI6
YMR280CCAT8gluconeogenesis, positive regulation of transcription from Pol II promoter ->
alcohol metabolism, monosaccharide metabolism, carbohydrate metabolism, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, biosynthesis, energy pathways
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ABF1, REB1
Main:cell proliferation (0.80)metalloendopeptidase activity (0.25)nucleus (0.75)FKH2 NDD1 MCM1 REB1 DIG1 (0.40)
Score:0.800.000.670.300
P-value:2.055E-02 (cell proliferation)2.543E+00 (enzyme activity)4.566E-02 (bud neck)7.290E-02 (DIG1)

ALPHA1(1) AND ALPHA2(1) AND ALPHA1'(1) AND mRRPE(1) => SimExpr(YER131W) OR SimExpr(other) : 5 2

    EXPR: (0.112) ALPHA2 (P < 0.006) ALPHA1' (P < 0.009) mRRPE (P < 0.187) ALPHA1 (P < 0.008)

ORFSYMBOLPFCTF
YDR023WSES1amino acid activation ->
biosynthesis, protein metabolism
serine-tRNA ligase activity ->
serine-tRNA ligase activity
cytoplasm ->
cytoplasm
GRF10(Pho2), MOT3
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
ATP dependent RNA helicase activity
nucleolus ->
nucleus
HIR2, USV1
|YHR128W|FUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
uracil phosphoribosyltransferase activity
CIN5
YNL111CCYB5sterol biosynthesis ->
alcohol metabolism, biosynthesis, lipid metabolism
electron transporter activity ->
electron transporter activity
microsome ->
membrane fraction
ABF1, GCR2, GTS1, NRG1, REB1, ROX1
YER131WRPS26Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YBR048WRPS11Bprotein biosynthesis, ribosomal small subunit assembly and maintenance, regulation of translational fidelity ->
cell organization and biogenesis, biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
GAL4, HAP4, LEU3, MET31, MSN1
|YBR294W|SUL1sulfate transport ->
transport
sulfate transporter activity ->
sulfate transporter activity
plasma membrane ->
plasma membrane
STB1
Main:biosynthesis (0.71)structural constituent of ribosome (0.29)cytoplasm (0.50)GCR2 (0.14)
Score:0.570.050.200.000
P-value:3.036E-01 (biosynthesis)6.853E-01 (structural constituent of ribosome)1.945E-01 (cytosolic small ribosomal subunit (sensu Eukarya))6.785E-01 (MSN1)

LYS14(1) AND ATRepeat(1) => SimExpr(YDR226W) OR SimExpr(other) : 5 1

mRRPE(1) AND PAC(1) => SimExpr(YMR239C) OR SimExpr(other) : 26 3

mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YMR239C) : 11

ALPHA1'(1) AND MCB(1) AND SCB(1) => SimExpr(other) OR SimExpr(YGL225W) : 2 5

ALPHA1(1) AND mRRPE(1) AND PAC(1) => SimExpr(YJL033W) OR SimExpr(other) : 6 1

ALPHA1'(1) AND SFF(1) AND RPN4(1) => SimExpr(other) OR SimExpr(YOR362C) : 3 9

    EXPR: (0.114) ALPHA1' (P < 0.000) SFF (P < 0.000) RPN4 (P < 0.140)

ORFSYMBOLPFCTF
YDR394WRPT3ubiquitin-dependent protein catabolism ->
macromolecule catabolism, protein metabolism
ATPase activity, endopeptidase activity ->
purine nucleotide binding, peptidase activity, hydrolase activity\, acting on acid anhydrides
proteasome regulatory particle (sensu Eukarya), proteasome regulatory particle\, base subcomplex (sensu Eukarya) ->
cytosol, endoplasmic reticulum, nucleus
RTG1
YDL126CCDC48ubiquitin-dependent protein catabolism, nonselective vesicle fusion, cell cycle, apoptosis, protein transport, ER-associated protein catabolism ->
secretory pathway, cell cycle, programmed cell death, protein transport, macromolecule catabolism, vesicle-mediated transport, protein metabolism
ATPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, microsome, endoplasmic reticulum, cytosol ->
nucleus, vesicular fraction, endoplasmic reticulum, cytosol
DAL82, MAL33, SWI4
|YER109C|FLO8pseudohyphal growth, invasive growth ->
cellular morphogenesis
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus, cytoplasm ->
nucleus, cytoplasm
|YGR184C|UBR1protein polyubiquitination, protein monoubiquitination ->
macromolecule catabolism, protein modification, protein metabolism
ubiquitin-protein ligase activity ->
ligase activity\, forming carbon-nitrogen bonds
proteasome complex (sensu Eukarya) ->
cytosol, endoplasmic reticulum, nucleus
HMS1, REB1, RIM101
YER012WPRE1ubiquitin-dependent protein catabolism, response to stress, sporulation (sensu Saccharomyces) ->
macromolecule catabolism, response to stress, sporulation (sensu Fungi), protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya), nucleus ->
cytosol, nucleus, endoplasmic reticulum
YOR362CPRE10ubiquitin-dependent protein catabolism ->
macromolecule catabolism, protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya) ->
cytosol, endoplasmic reticulum, nucleus
|YGR124W|ASN2asparagine biosynthesis ->
amine biosynthesis, amine metabolism, amino acid and derivative metabolism, carboxylic acid metabolism
asparagine synthase (glutamine-hydrolyzing) activity ->
ligase activity\, forming carbon-nitrogen bonds
ASH1, ROX1
YNL012WSPO1meiosis ->
cell cycle
phospholipase activity ->
hydrolase activity\, acting on ester bonds
nucleus ->
nucleus
ARO80, SRD1
YML092CPRE8ubiquitin-dependent protein catabolism ->
macromolecule catabolism, protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya) ->
cytosol, endoplasmic reticulum, nucleus
YGL201CMCM6DNA unwinding, DNA replication initiation ->
cell cycle, DNA metabolism
chromatin binding, ATP dependent DNA helicase activity ->
DNA binding, adenyl nucleotide binding, hydrolase activity\, acting on acid anhydrides
cytoplasm, nucleus, pre-replicative complex ->
cytoplasm, nucleus, nucleoplasm
MCM1
YOL038WPRE6ubiquitin-dependent protein catabolism ->
macromolecule catabolism, protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya) ->
cytosol, endoplasmic reticulum, nucleus
YMR100WMUB1regulation of budding ->
budding
Main:macromolecule catabolism (0.58)peptidase activity (0.45)nucleus (1.00)SWI4 (0.17)
Score:0.360.251.000.000
P-value:6.617E-07 (ubiquitin-dependent protein catabolism)6.074E-06 (endopeptidase activity)2.116E-08 (proteasome complex (sensu Eukarya))7.267E-01 (MAL33)

ALPHA1(1) AND ALPHA1'(1) AND MCB(1) => SimExpr(YDR097C) OR SimExpr(other) : 5 2

ABF1(1) AND SFF(1) AND mRRPE(1) => SimExpr(YLR293C) OR SimExpr(other) : 8 3

    EXPR: (0.107) ABF1 (P < 0.000) SFF (P < 0.000) mRRPE (P < 0.035)

ORFSYMBOLPFCTF
|YAR019C|CDC15cytokinesis, regulation of exit from mitosis, protein amino acid phosphorylation ->
phosphorus metabolism, cell proliferation, mitotic cell cycle, protein metabolism
protein kinase activity ->
transferase activity\, transferring phosphorus-containing groups
spindle pole body ->
cytoplasm
PHO4
|YAL016W|TPD3protein biosynthesis, actin filament organization, mitotic spindle checkpoint, bud growth, protein amino acid dephosphorylation ->
biosynthesis, cell organization and biogenesis, asexual reproduction, phosphorus metabolism, cell proliferation, cell cycle, protein metabolism
protein phosphatase type 2A activity ->
hydrolase activity\, acting on ester bonds
protein phosphatase type 2A complex, bud neck, nucleus, cytoplasm, shmoo tip, bud tip, spindle pole body ->
protein phosphatase type 2A complex, nucleus, site of polarized growth (sensu Fungi), site of polarized growth (sensu Saccharomyces), cytoplasm, microtubule organizing center
ABF1
YER110CKAP123protein-nucleus import ->
protein metabolism, transport
protein carrier activity ->
protein carrier activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YNL292WPUS4tRNA modification ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
pseudouridylate synthase activity ->
carbon-oxygen lyase activity
mitochondrion, nucleus ->
cytoplasm, nucleus
RCS1
YDR172WSUP35translational termination ->
biosynthesis, protein metabolism
translation release factor activity ->
translation factor activity\, nucleic acid binding
cytosol ->
cytoplasm
ABF1, ZMS1
YNL111CCYB5sterol biosynthesis ->
alcohol metabolism, biosynthesis, lipid metabolism
electron transporter activity ->
electron transporter activity
microsome ->
membrane fraction
ABF1, GCR2, GTS1, NRG1, REB1, ROX1
YGR282CBGL2cell wall organization and biogenesis ->
cell organization and biogenesis
glucan 1\,3-beta-glucosidase activity ->
hydrolase activity\, acting on glycosyl bonds
cell wall ->
cell wall
ABF1, CIN5, SMP1
YDR385WEFT2translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
ABF1, FHL1, INO4
YLR293CGSP1nucleocytoplasmic transport, nuclear organization and biogenesis, rRNA processing ->
transport, cell organization and biogenesis, RNA metabolism, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RAN small monomeric GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
cytoplasm, nucleus ->
cytoplasm, nucleus
ABF1
YMR308CPSE1mRNA-nucleus export ->
transport, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
protein carrier activity ->
protein carrier activity
nucleus, cytoplasm ->
nucleus, cytoplasm
SWI4
|YJL159W|HSP150cell wall organization and biogenesis ->
cell organization and biogenesis
structural constituent of cell wall ->
structural constituent of cell wall
cell wall ->
cell wall
ACE2, HIR2, MCM1, RLM1, SWI5
Main:protein metabolism (0.45)protein carrier activity (0.18)cytoplasm (0.73)ABF1 (0.60)
Score:0.440.040.530.333
P-value:7.051E-02 (nucleocytoplasmic transport)1.280E-02 (protein carrier activity)1.747E-01 (spindle pole body)1.106E-03 (ABF1)

ABF1(1) AND PAC(1) => SimExpr(YJL050W) : 5

    EXPR: (0.078) ABF1 (P < 0.000) PAC (P < 0.007)

ORFSYMBOLPFCTF
YLR197WSIK1rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
RNA processing, ribosome biogenesis and assembly, rRNA metabolism, transcription\, DNA-dependent
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex, nucleus, nucleolus ->
nucleus, ribonucleoprotein complex
DAL81, HAL9
YER110CKAP123protein-nucleus import ->
intracellular protein transport, nucleocytoplasmic transport, protein metabolism
protein carrier activity ->
protein carrier activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YNL112WDBP2RNA helicase activity ->
RNA helicase activity
bud neck ->
site of polarized growth (sensu Fungi)
YNL292WPUS4tRNA modification ->
RNA processing, tRNA metabolism
pseudouridylate synthase activity ->
pseudouridylate synthase activity
mitochondrion, nucleus ->
cytoplasm, nucleus
RCS1
YJL050WMTR435S primary transcript processing ->
ribosome biogenesis and assembly, RNA processing, transcription\, DNA-dependent
ATP dependent RNA helicase activity ->
RNA helicase activity, ATP dependent helicase activity, RNA dependent ATPase activity
nucleolus ->
nucleus
Main:RNA processing (0.75)RNA helicase activity (0.50)nucleus (0.80)RCS1 (0.50)
Score:0.500.170.600.000
P-value:8.295E-03 (RNA modification)1.022E-02 (RNA helicase activity)6.316E-02 (nucleolus)1.521E-01 (HAL9)

SFF(1) AND RPN4(1) => SimExpr(other) OR SimExpr(YNL012W) : 5 12

    EXPR: (0.117) SFF (P < 0.000) RPN4 (P < 0.173)

ORFSYMBOLPFCTF
YDR394WRPT3ubiquitin-dependent protein catabolism ->
catabolism, protein metabolism
ATPase activity, endopeptidase activity ->
purine nucleotide binding, peptidase activity, hydrolase activity\, acting on acid anhydrides
proteasome regulatory particle (sensu Eukarya), proteasome regulatory particle\, base subcomplex (sensu Eukarya) ->
cytoplasm, nucleus
RTG1
YDL126CCDC48ubiquitin-dependent protein catabolism, nonselective vesicle fusion, cell cycle, apoptosis, protein transport, ER-associated protein catabolism ->
cell proliferation, cell death, macromolecule catabolism, transport, protein metabolism
ATPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, microsome, endoplasmic reticulum, cytosol ->
nucleus, membrane fraction, cytoplasm
DAL82, MAL33, SWI4
|YER109C|FLO8pseudohyphal growth, invasive growth ->
cell organization and biogenesis
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus, cytoplasm ->
nucleus, cytoplasm
|YGR184C|UBR1protein polyubiquitination, protein monoubiquitination ->
catabolism, protein metabolism
ubiquitin-protein ligase activity ->
ligase activity\, forming carbon-nitrogen bonds
proteasome complex (sensu Eukarya) ->
cytoplasm, nucleus
HMS1, REB1, RIM101
YER012WPRE1ubiquitin-dependent protein catabolism, response to stress, sporulation (sensu Saccharomyces) ->
catabolism, response to stress, sporulation, protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya), nucleus ->
nucleus, cytoplasm
YOR362CPRE10ubiquitin-dependent protein catabolism ->
catabolism, protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya) ->
cytoplasm, nucleus
YIL075CRPN2ubiquitin-dependent protein catabolism ->
catabolism, protein metabolism
receptor activity, endopeptidase activity ->
receptor activity, peptidase activity
proteasome regulatory particle (sensu Eukarya) ->
cytoplasm, nucleus
MSS11, REB1, SFL1
|YGR124W|ASN2asparagine biosynthesis ->
amine metabolism, amino acid and derivative metabolism, organic acid metabolism, biosynthesis
asparagine synthase (glutamine-hydrolyzing) activity ->
ligase activity\, forming carbon-nitrogen bonds
ASH1, ROX1
YFR050CPRE4ubiquitin-dependent protein catabolism ->
catabolism, protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya) ->
cytoplasm, nucleus
MTH1, REB1
|YNL251C|NRD1nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleus ->
nucleus
ABF1, MAC1
|YKL135C|APL2vesicle-mediated transport ->
transport
clathrin binding ->
clathrin binding
AP-1 adaptor complex ->
cytoplasmic vesicle, cytoplasm
ABF1, DOT6
YNL012WSPO1meiosis ->
cell proliferation
phospholipase activity ->
hydrolase activity\, acting on ester bonds
nucleus ->
nucleus
ARO80, SRD1
YGR286CBIO2biotin biosynthesis ->
biosynthesis, coenzymes and prosthetic group metabolism, vitamin metabolism, heterocycle metabolism, organic acid metabolism, sulfur metabolism
biotin synthase activity ->
transferase activity\, transferring sulfur-containing groups
YML092CPRE8ubiquitin-dependent protein catabolism ->
catabolism, protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya) ->
cytoplasm, nucleus
YGL201CMCM6DNA unwinding, DNA replication initiation ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
chromatin binding, ATP dependent DNA helicase activity ->
DNA binding, adenyl nucleotide binding, hydrolase activity\, acting on acid anhydrides
cytoplasm, nucleus, pre-replicative complex ->
cytoplasm, nucleus
MCM1
YOL038WPRE6ubiquitin-dependent protein catabolism ->
catabolism, protein metabolism
endopeptidase activity ->
peptidase activity
proteasome core complex (sensu Eukarya) ->
cytoplasm, nucleus
YMR100WMUB1regulation of budding ->
asexual reproduction
Main:protein metabolism (0.53)peptidase activity (0.44)nucleus (0.93)REB1 (0.30)
Score:0.310.210.980.089
P-value:2.455E-08 (ubiquitin-dependent protein catabolism)1.712E-08 (endopeptidase activity)3.549E-11 (proteasome complex (sensu Eukarya))8.044E-01 (REB1)

SWI5(1) AND PAC(1) => SimExpr(YHR089C) OR SimExpr(other) : 8 3

mRRPE(1) AND PAC(1) => SimExpr(YHR089C) OR SimExpr(other) : 28 1

mRRPE(1) AND PAC(1) => SimExpr(YPL043W) OR SimExpr(other) : 28 1

mRRPE(1) AND PAC(1) AND MCM1'(1) => SimExpr(YPL043W) : 6

AVERAGE SCORES:

P
  SCORE: 0.621 (Part of genes covered by "Main": 0.729) (No. rules=52/52)
  P-VALUE: 0.635
F
  SCORE: 0.230 (Part of genes covered by "Main": 0.457) (No. rules=52/52)
  P-VALUE: 0.538
C
  SCORE: 0.692 (Part of genes covered by "Main": 0.795) (No. rules=52/52)
  P-VALUE: 0.596
TF
  SCORE: 0.409 (Part of genes covered by "Main": 0.553) (No. rules=50/52)
  P-VALUE: 0.520
EXPRESSION: 0.462 (52)