Table 5 Classifications obtained with the model

Summary of re-classification of known genes and classification of unknown genes to the 23 broad biological function classes by using the model evalutated in Table 4.

 

PROCESS

        annotate

genes

 

re-classifications

for

known genes (correct)

 

classifications

for

unknown genes

Ion homeostasis

4

4 (4)

4

Protein targeting

6

8 (6)

2

Blood coagulation

10

13 (10)

34

DNA metabolism

19

33 (19)

28

Intracellular signaling cascade

26

39 (25)

14

Energy pathways

6

6 (6)

0

Cell cycle

47

66 (44)

38

Oncogenesis

17

41 (17)

31

Circulation

15

17 (15)

3

Cell death

16

22 (16)

26

Developmental processes

15

23 (15)

21

Transcription

52

61 (47)

88

Defense (immune) response

37

44 (32)

20

Cell adhesion

30

32 (29)

19

Stress response

17

26 (17)

22

Protein metabolism and modification

33

45 (33)

35

Cell motility

32

40 (29)

21

Cell surface rec linked signal transd

27

38 (26)

34

Lipid metabolism

26

44 (25)

45

Transport

22

30 (22)

19

Cell organization and biogenesis

33

40 (30)

13

Cell proliferation

53

60 (46)

30

Amino acid and derivative metabolism

6

6 (6)

2