SFF(1) AND mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YGR280C) OR SimExpr(other) : 7 3

    EXPR: (0.134) SFF (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.004) SCB (P < 0.000)

ORFSYMBOLPFCTF
YGR280CPXR135S primary transcript processing, snRNA processing ->
cytoplasm organization and biogenesis, RNA metabolism, transcription
RNA binding ->
RNA binding
nucleolus ->
nucleus
|YJL138C|TIF2translational initiation, regulation of translational initiation ->
macromolecule biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
translation factor activity\, nucleic acid binding, RNA binding
ribosome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
PHD1
|YMR259C|NO SYMBOLARG80, GCR2, GTS1, HIR1, SRD1
YHR052WCIC1protein catabolism ->
macromolecule catabolism, protein metabolism
protein binding\, bridging ->
protein binding\, bridging
nucleolus, proteasome complex (sensu Eukarya) ->
nucleus, cytoplasm
HAP4, MATa1
YOR078WBUD21processing of 20S pre-rRNA ->
cytoplasm organization and biogenesis, RNA metabolism, transcription
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YJL109CUTP10processing of 20S pre-rRNA ->
cytoplasm organization and biogenesis, RNA metabolism, transcription
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YJL069CUTP18ABF1
YCL059CKRR1ribosome biogenesis, rRNA processing ->
cytoplasm organization and biogenesis, RNA metabolism, transcription
nucleolus ->
nucleus
|YLR249W|YEF3translational elongation ->
macromolecule biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
Main:RNA metabolism (0.50)RNA binding (0.57)nucleus (0.62)ABF1 (0.29)
Score:0.320.330.710.048
P-value:3.912E-03 (rRNA processing)1.827E-02 (snoRNA binding)2.304E-04 (nucleolus)1.000E+00

LYS14(1) AND mRRPE(1) AND PAC(1) => SimExpr(YGR280C) OR SimExpr(other) : 7 2

    EXPR: (0.126) LYS14 (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.002)

ORFSYMBOLPFCTF
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YML093WUTP14processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
|YMR259C|NO SYMBOLARG80, GCR2, GTS1, HIR1, SRD1
YHR052WCIC1protein catabolism ->
catabolism, protein metabolism
protein binding\, bridging ->
protein binding\, bridging
nucleolus, proteasome complex (sensu Eukarya) ->
nucleus, cytoplasm
HAP4, MATa1
YJR070CNO SYMBOLGAT3, YAP5
YNL110CNOP15ribosomal large subunit biogenesis ->
cell organization and biogenesis
nucleus, nucleolus ->
nucleus
|YHR128W|FUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
CIN5
YMR290CHAS1nucleolus, nuclear membrane ->
nucleus, endomembrane system
RAP1
YGL099WLSG1conjugation with cellular fusion, sporulation (sensu Saccharomyces), ribosome nucleus export ->
conjugation, sporulation, cell organization and biogenesis, protein metabolism, transport, sexual reproduction
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
cytoplasm ->
cytoplasm
PHO4
Main:cell organization and biogenesis (0.67)RNA binding (0.40)nucleus (0.83)GCR2 (0.17)
Score:0.600.100.730.000
P-value:5.396E-03 (ribosome biogenesis)9.488E-01 (RNA binding)8.333E-05 (nucleolus)9.462E-01 (MATa1)

STRE'(1) AND Gcr1(1) => SimExpr(YJL052W) : 5

    EXPR: (0.108) STRE' (P < 0.000) Gcr1 (P < 0.000)

ORFSYMBOLPFCTF
YER177WBMH1pseudohyphal growth, sporulation (sensu Saccharomyces), RAS protein signal transduction, activation of MAPK (pseudohyphal growth), glycogen metabolism ->
cell organization and biogenesis, sporulation, carbohydrate metabolism, signal transduction, energy derivation by oxidation of organic compounds
DNA binding ->
DNA binding
nucleus ->
nucleus
ACE2, GCR1, MBP1, NDD1, SWI4, SWI5
YGR254WENO1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
phosphopyruvate hydratase activity ->
hydro-lyase activity
phosphopyruvate hydratase complex, cytoplasm ->
cytoplasm
FKH2, MSN4, PDR1, SWI5, YAP5
YNL241CZWF1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
glucose-6-phosphate 1-dehydrogenase activity ->
oxidoreductase activity\, acting on the CH-OH group of donors\, NAD or NADP as acceptor
cytoplasm ->
cytoplasm
ACE2, ADR1, FKH2, HIR1, IME4, MBP1, NDD1, PHO4, RCS1, SFP1, SKN7, SWI5
YJL052WTDH1gluconeogenesis, glycolysis ->
alcohol metabolism, carbohydrate biosynthesis, carbohydrate metabolism, energy derivation by oxidation of organic compounds, biosynthesis, catabolism
glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) activity ->
oxidoreductase activity\, acting on the aldehyde or oxo group of donors\, NAD or NADP as acceptor
cytosol, lipid particle, cell wall ->
cytoplasm, cell wall
MAC1
YOR374WALD4ethanol metabolism ->
alcohol metabolism
aldehyde dehydrogenase (NAD+) activity ->
oxidoreductase activity\, acting on the aldehyde or oxo group of donors\, NAD or NADP as acceptor
mitochondrion ->
cytoplasm
RAP1
Main:alcohol metabolism (0.80)oxidoreductase activity\, acting on the aldehyde or oxo group of donors\, NAD or NADP as acceptor (0.40)cytoplasm (0.80)SWI5 (0.60)
Score:0.900.100.600.300
P-value:1.748E-04 (monosaccharide catabolism)3.111E-03 (oxidoreductase activity\, acting on the aldehyde or oxo group of donors\, NAD or NADP as acceptor)5.952E-01 (cytosol)2.493E-03 (SWI5)

MCB(1) AND PAC(1) => SimExpr(YLR049C) OR SimExpr(other) : 5 2

    EXPR: (0.125) MCB (P < 0.001) PAC (P < 0.000)

ORFSYMBOLPFCTF
|YIL026C|IRR1mitotic sister chromatid cohesion, colony morphology, germination (sensu Saccharomyces), cytogamy ->
cell organization and biogenesis, sporulation, plasma membrane fusion, sporulation (sensu Fungi), cell proliferation, conjugation, sexual reproduction
protein binding ->
protein binding
nuclear cohesin complex ->
chromosome, nucleus
ABF1, MAL33, MBP1, SWI6
YPR144CNOC4ribosome biogenesis ->
cell organization and biogenesis
nucleus ->
nucleus
HIR1
YLR049CNO SYMBOLMBP1, SWI5
YIL066CRNR3DNA replication ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonucleoside-diphosphate reductase activity ->
ribonucleoside-diphosphate reductase activity
cytoplasm ->
cytoplasm
RFX1, STB1
YDR279WRNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YOR284WHUA2RFX1, YAP6
|YJR055W|HIT1aerobic respiration ->
energy pathways
STP2
Main:cell organization and biogenesis (0.50)ribonucleoside-diphosphate reductase activity (0.50)nucleus (0.67)MBP1 (0.43)
Score:0.330.000.330.190
P-value:5.867E-01 (DNA replication and chromosome cycle)2.000E+003.799E+00 (nucleus)1.050E-02 (MBP1)

ALPHA1'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YOR272W) OR SimExpr(other) : 36 12

    EXPR: (0.133) ALPHA1' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.001)

ORFSYMBOLPFCTF
YNR053CNOG2mRNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, nucleolus, nucleoplasm ->
nucleus, nucleoplasm
ABF1, AZF1
|YMR049C|ERB1rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RTG3
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YML093WUTP14processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YHR196WUTP9processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex, nucleolus, nucleus ->
nucleus, ribonucleoprotein complex
YGL171WROK135S primary transcript processing, mRNA splicing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity, ATPase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
RGT1
YDR184CATC1response to stress, polar budding ->
response to stress, asexual reproduction
nucleus ->
nucleus
ARO80, GLN3, SIP4, SKO1
YJR070CNO SYMBOLGAT3, YAP5
YNL308CKRI1ribosome biogenesis ->
cell growth and/or maintenance
nucleolus ->
nucleus
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
MATa1, RCS1, RTG3, SWI5
|YNL112W|DBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Fungi)
YDR279WRNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YDR496CPUF6RFX1
YGL169WSUA5cell growth and/or maintenance ->
cell growth and/or maintenance
ABF1
YOR272WYTM1chromosome organization and biogenesis (sensu Eukarya), ribosomal large subunit biogenesis ->
cell growth and/or maintenance
nucleus, nucleolus ->
nucleus
LEU3, PUT3, REB1
|YOR359W|VTS1protein-vacuolar targeting ->
protein metabolism, cell growth and/or maintenance
intracellular transporter activity ->
transporter activity
cytosol ->
cytoplasm
RAP1
YLR002CNOC3DNA replication initiation, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
chromatin binding, protein binding ->
DNA binding, protein binding
nucleus, nucleolus ->
nucleus
HIR1, IXR1, RCS1
|YGR162W|TIF4631translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
HSF1
|YOR095C|RKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
YHR169WDBP835S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
|YNL175C|NOP13RNA binding ->
RNA binding
nucleolus, nucleoplasm ->
nucleus
INO2, INO4
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
lipid biosynthesis, biosynthesis, membrane lipid metabolism, protein metabolism, lipoprotein metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
cytoplasm, endomembrane system
SWI5
|YHR128W|FUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
CIN5
|YCR090C|NO SYMBOL
YNL132WKRE33
YOR078WBUD21processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YMR229CRRP5rRNA processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding, snoRNA binding ->
RNA binding
nucleolus, nucleolus organizer complex ->
nucleus
FHL1, RAP1
YGR245CSDA1actin cytoskeleton organization and biogenesis, start control point of mitotic cell cycle ->
cell growth and/or maintenance
nucleus ->
nucleus
YOL022CNO SYMBOLMAC1, MOT3, RTS2
|YFR001W|LOC1ribosomal large subunit biogenesis ->
cell growth and/or maintenance
mRNA binding ->
RNA binding
nucleus ->
nucleus
ARG80, GAL4, GTS1, HAP4, HIR1, LEU3, MSN2, MSN4, RCS1, RLM1, SWI4
YBR104WYMC2transport ->
cell growth and/or maintenance
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YER082CUTP7processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
CHA4
YJL109CUTP10processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YNR024WNO SYMBOL
YKL014CNO SYMBOLABF1
|YER110C|KAP123protein-nucleus import ->
protein metabolism, cell growth and/or maintenance
protein carrier activity ->
protein binding
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YCL059CKRR1ribosome biogenesis, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YNL075WIMP4rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
rRNA primary transcript binding ->
RNA binding
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
USV1
YCR072CNO SYMBOLYFL044C
YAL059WECM1cell wall organization and biogenesis ->
cell growth and/or maintenance
MOT3
YGL099WLSG1conjugation with cellular fusion, sporulation (sensu Saccharomyces), ribosome nucleus export ->
conjugation, protein metabolism, cell growth and/or maintenance, sexual reproduction
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
cytoplasm ->
cytoplasm
PHO4
YCR016WNO SYMBOL
YJL033WHCA435S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
|YPR010C|RPA135transcription from Pol I promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA-directed RNA polymerase activity ->
transferase activity\, transferring phosphorus-containing groups
DNA-directed RNA polymerase I complex ->
nucleus
ROX1, SIG1
YDR449CUTP6processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YLR222CUTP13processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1
Main:cell growth and/or maintenance (0.81)RNA binding (0.61)nucleus (0.82)ABF1 (0.18)
Score:0.750.390.710.068
P-value:4.375E-19 (ribosome biogenesis)6.431E-09 (snoRNA binding)7.397E-20 (nucleolus)1.000E+00

CSRE(1) AND mRRPE(1) AND PAC(1) => SimExpr(YGR159C) : 5

    EXPR: (0.099) mRRPE (P < 0.000) PAC (P < 0.000) CSRE (P < 0.000)

ORFSYMBOLPFCTF
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YGR245CSDA1actin cytoskeleton organization and biogenesis, start control point of mitotic cell cycle ->
cell organization and biogenesis, cell proliferation
nucleus ->
nucleus
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
hypoxanthine phosphoribosyltransferase activity
YPR010CRPA135transcription from Pol I promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA-directed RNA polymerase activity ->
DNA-directed RNA polymerase activity
DNA-directed RNA polymerase I complex ->
nucleus
ROX1, SIG1
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
single-stranded DNA binding, RNA binding
nucleolus, nucleus ->
nucleus
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.80)RNA binding (0.33)nucleus (1.00)ABF1 (0.50)
Score:0.800.001.000.000
P-value:7.627E-03 (transcription from Pol I promoter)7.516E-01 (transferase activity)3.882E-03 (nucleolus)2.427E-01 (SIG1)

ECB(1) AND MCB(1) => SimExpr(YML027W) OR SimExpr(other) : 5 2

    EXPR: (0.117) ECB (P < 0.000) MCB (P < 0.024)

ORFSYMBOLPFCTF
YCL024WKCC4septin checkpoint, protein amino acid phosphorylation, bud growth, axial budding, septin ring assembly ->
cell cycle, phosphate metabolism, budding, septin ring assembly, protein modification
protein kinase activity ->
protein kinase activity
bud neck ->
bud neck
ASH1, CIN5, DAL81, HSF1, MET4, PHD1, RAP1, STP1, STP2
|YMR102C|NO SYMBOL
YNR028WCPR8peptidyl-prolyl cis-trans isomerase activity ->
peptidyl-prolyl cis-trans isomerase activity
ASH1, DIG1, MCM1
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cytoplasm organization and biogenesis, cell cycle, transcription
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
YDR507CGIN4septin checkpoint, protein amino acid phosphorylation, bud growth, axial budding, septin ring assembly ->
cell cycle, phosphate metabolism, budding, septin ring assembly, protein modification
protein kinase activity ->
protein kinase activity
bud neck ->
bud neck
GRF10(Pho2), GTS1, MBP1, MCM1, SWI4, SWI6
|YGR189C|CRH1cell wall, incipient bud site ->
cell wall, incipient bud site
GRF10(Pho2), MBP1, RLM1, STE12, SWI4, SWI5
YML027WYOX1negative regulation of transcription from Pol II promoter\, mitotic, regulation of mitotic cell cycle ->
regulation of transcription, M phase, transcription, cell cycle
specific transcriptional repressor activity, DNA binding ->
specific transcriptional repressor activity, DNA binding
nucleus ->
nucleus
MBP1, SWI4, SWI6
Main:cell cycle (1.00)protein kinase activity (0.40)nucleus (0.40)SWI4 MBP1 (0.67)
Score:1.000.100.200.667
P-value:3.093E-04 (septin checkpoint)3.615E-01 (protein kinase activity)1.114E-01 (bud neck)4.457E-04 (ASH1)

ALPHA1(1) AND SWI5(1) AND MCB(1) => SimExpr(YML027W) OR SimExpr(other) : 7 3

    EXPR: (0.118) SWI5 (P < 0.000) MCB (P < 0.012) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YKR077WNO SYMBOL
|YLR049C|NO SYMBOLMBP1, SWI5
YDR134CNO SYMBOLASH1, NRG1, SOK2, SWI4
|YJR030C|NO SYMBOLMBP1, PHO4, RTG1, SWI6
|YER132C|PMD1sporulation ->
sporulation
SMP1
YPR185WAPG13protein-vacuolar targeting, autophagy ->
organelle organization and biogenesis, autophagy, intracellular protein transport, protein metabolism
protein binding ->
protein binding
extrinsic to membrane ->
extrinsic to membrane
MET4, SWI6
YFR027WECO1sister chromatid cohesion, DNA replication, DNA repair ->
DNA replication and chromosome cycle, DNA repair, mitotic cell cycle, DNA metabolism
acetyltransferase activity ->
acetyltransferase activity
nuclear chromatin ->
chromosome, nucleus
YMR076CPDS5mitotic sister chromatid cohesion, mitotic chromosome condensation ->
DNA replication and chromosome cycle, M phase, mitotic cell cycle
structural molecule activity ->
structural molecule activity
condensed nuclear chromosome ->
chromosome, nucleus
FKH2, MBP1, SWI6
YML027WYOX1negative regulation of transcription from Pol II promoter\, mitotic, regulation of mitotic cell cycle ->
mitotic cell cycle, M phase, regulation of transcription, nuclear division, transcription\, DNA-dependent, regulation of cell cycle
specific transcriptional repressor activity, DNA binding ->
specific transcriptional repressor activity, DNA binding
nucleus ->
nucleus
MBP1, SWI4, SWI6
YMR179WSPT21regulation of transcription from Pol II promoter ->
regulation of transcription, transcription\, DNA-dependent
MBP1, STB1, SWI4, SWI6, UGA3
Main:mitotic cell cycle (0.50)DNA binding (0.25)nucleus (0.75)MBP1 SWI6 (0.62)
Score:0.270.000.500.571
P-value:1.053E-02 (sister chromatid cohesion)2.575E+00 (binding)2.915E-01 (nuclear chromosome)4.452E-05 (SWI6)

MCM1(1) AND ALPHA1(1) AND MCB(1) => SimExpr(YML027W) OR SimExpr(other) : 5 1

    EXPR: (0.102) MCB (P < 0.008) MCM1 (P < 0.000) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YKR077WNO SYMBOL
YCL024WKCC4septin checkpoint, protein amino acid phosphorylation, bud growth, axial budding, septin ring assembly ->
cell cycle, phosphate metabolism, budding, septin ring assembly, protein modification
protein kinase activity ->
protein kinase activity
bud neck ->
bud neck
ASH1, CIN5, DAL81, HSF1, MET4, PHD1, RAP1, STP1, STP2
YNR028WCPR8peptidyl-prolyl cis-trans isomerase activity ->
peptidyl-prolyl cis-trans isomerase activity
ASH1, DIG1, MCM1
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cytoplasm organization and biogenesis, cell cycle, transcription
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
|YGR189C|CRH1cell wall, incipient bud site ->
cell wall, incipient bud site
GRF10(Pho2), MBP1, RLM1, STE12, SWI4, SWI5
YML027WYOX1negative regulation of transcription from Pol II promoter\, mitotic, regulation of mitotic cell cycle ->
regulation of transcription, M phase, transcription, cell cycle
specific transcriptional repressor activity, DNA binding ->
specific transcriptional repressor activity, DNA binding
nucleus ->
nucleus
MBP1, SWI4, SWI6
Main:cell cycle (1.00)DNA binding (0.25)nucleus (0.50)SWI4 ASH1 MBP1 (0.60)
Score:1.000.000.170.600
P-value:1.856E-01 (regulation of cell cycle)3.367E-01 (transcription regulator activity)3.369E+00 (nucleus)2.445E-04 (ASH1)

MCM1(1) AND ECB(1) AND MCB(1) => SimExpr(YML027W) OR SimExpr(other) : 5 1

    EXPR: (0.111) ECB (P < 0.000) MCB (P < 0.028) MCM1 (P < 0.000)

ORFSYMBOLPFCTF
YCL024WKCC4septin checkpoint, protein amino acid phosphorylation, bud growth, axial budding, septin ring assembly ->
cell cycle, phosphate metabolism, budding, septin ring assembly, protein modification
protein kinase activity ->
protein kinase activity
bud neck ->
bud neck
ASH1, CIN5, DAL81, HSF1, MET4, PHD1, RAP1, STP1, STP2
YNR028WCPR8peptidyl-prolyl cis-trans isomerase activity ->
peptidyl-prolyl cis-trans isomerase activity
ASH1, DIG1, MCM1
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cytoplasm organization and biogenesis, cell cycle, transcription
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
YDR507CGIN4septin checkpoint, protein amino acid phosphorylation, bud growth, axial budding, septin ring assembly ->
cell cycle, phosphate metabolism, budding, septin ring assembly, protein modification
protein kinase activity ->
protein kinase activity
bud neck ->
bud neck
GRF10(Pho2), GTS1, MBP1, MCM1, SWI4, SWI6
|YGR189C|CRH1cell wall, incipient bud site ->
cell wall, incipient bud site
GRF10(Pho2), MBP1, RLM1, STE12, SWI4, SWI5
YML027WYOX1negative regulation of transcription from Pol II promoter\, mitotic, regulation of mitotic cell cycle ->
regulation of transcription, M phase, transcription, cell cycle
specific transcriptional repressor activity, DNA binding ->
specific transcriptional repressor activity, DNA binding
nucleus ->
nucleus
MBP1, SWI4, SWI6
Main:cell cycle (1.00)protein kinase activity (0.40)nucleus (0.40)SWI4 MBP1 (0.67)
Score:1.000.100.200.667
P-value:2.209E-04 (septin checkpoint)2.664E-01 (protein kinase activity)8.080E-02 (bud neck)2.055E-04 (MBP1)

MCM1(1) AND SFF'(1) AND STE12(1) AND MCM1'(1) => SimExpr(YDR309C) OR SimExpr(other) : 6 2

    EXPR: (0.114) SFF' (P < 0.000) STE12 (P < 0.001) MCM1' (P < 0.000) MCM1 (P < 0.000)

ORFSYMBOLPFCTF
YDR309CGIC2axial budding, Rho protein signal transduction, establishment of cell polarity (sensu Saccharomyces) ->
asexual reproduction, signal transduction, cell organization and biogenesis
small GTPase regulatory/interacting protein activity ->
small GTPase regulatory/interacting protein activity
actin cap (sensu Saccharomyces), bud tip, shmoo tip, incipient bud site ->
cell cortex, site of polarized growth (sensu Fungi), incipient bud site, cytoplasm
ASH1, HSF1, MBP1, PHD1, RLM1, SKN7, STB1, STE12, SWI4, SWI6
|YHR023W|MYO1cytokinesis, response to osmotic stress, axial budding ->
cell proliferation, response to abiotic stimulus, asexual reproduction
microfilament motor activity ->
microfilament motor activity
contractile ring (sensu Saccharomyces) ->
site of polarized growth (sensu Fungi), cell cortex, cytoplasm
YKR013WPRY2SWI4, SWI6
YNL053WMSG5adaptation to pheromone during conjugation with cellular fusion ->
conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
prenylated protein tyrosine phosphatase activity ->
prenylated protein tyrosine phosphatase activity
DIG1, FKH1, MCM1
YJL157CFAR1signal transduction during conjugation with cellular fusion, cell cycle arrest ->
signal transduction, cell proliferation, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
cyclin-dependent protein kinase inhibitor activity ->
cyclin-dependent protein kinase inhibitor activity
cytoplasm, nucleus ->
cytoplasm, nucleus
MCM1
YGR146CNO SYMBOLHSF1
|YAR018C|KIN3chromosome segregation ->
cell proliferation
protein kinase activity ->
protein kinase activity
FKH2, MCM1, MSS11, NDD1
YHR005CGPA1signal transduction during conjugation with cellular fusion ->
signal transduction, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
heterotrimeric G-protein GTPase activity ->
heterotrimeric G-protein GTPase activity
heterotrimeric G-protein complex, plasma membrane ->
extrinsic to membrane, plasma membrane
DIG1, IXR1, MCM1, PHD1, SOK2, STE12
Main:response to abiotic stimulus (0.67)heterotrimeric G-protein GTPase activity (0.17)cytoplasm (0.75)MCM1 (0.57)
Score:0.730.000.500.429
P-value:2.435E-04 (reproduction)1.759E+00 (hydrolase activity)2.090E-01 (cell cortex)1.848E-03 (MCM1)

RAP1(1) AND SFF(1) AND SWI5(1) AND SCB(1) => SimExpr(YLR344W) : 5

    EXPR: (0.072) SFF (P < 0.000) SWI5 (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.003)

ORFSYMBOLPFCTF
YLR344WRPL26Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
YOR369CRPS12protein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YMR194WRPL36Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
ARG80, ARO80, BAS1, CUP9, FHL1, HAL9, HAP4, HAP5, HMS1, MET31, NRG1, RAP1, RCS1, RME1, STP2
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.80)ribosome (1.00)FHL1 (0.80)
Score:1.000.601.000.600
P-value:1.576E-04 (protein biosynthesis)5.237E-04 (structural constituent of ribosome)4.219E-05 (ribosome)1.522E-04 (FHL1)

RAP1(1) AND SFF'(1) AND SWI5(1) AND SCB(1) => SimExpr(YLR344W) : 5

    EXPR: (0.072) SFF' (P < 0.000) SWI5 (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.001)

ORFSYMBOLPFCTF
YLR344WRPL26Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
YOR369CRPS12protein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YMR194WRPL36Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
ARG80, ARO80, BAS1, CUP9, FHL1, HAL9, HAP4, HAP5, HMS1, MET31, NRG1, RAP1, RCS1, RME1, STP2
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.80)ribosome (1.00)FHL1 (0.80)
Score:1.000.601.000.600
P-value:1.576E-04 (protein biosynthesis)5.237E-04 (structural constituent of ribosome)4.219E-05 (ribosome)1.522E-04 (FHL1)

ALPHA1(1) AND SFF(1) AND PDR(1) AND ATRepeat(1) => SimExpr(YLR121C) OR SimExpr(other) : 5 2

    EXPR: (0.125) SFF (P < 0.000) PDR (P < 0.003) ATRepeat (P < 0.001) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YGL197WMDS3sporulation ->
sporulation
cytoplasm ->
cytoplasm
MTH1
YOR153WPDR5drug transport, response to drug ->
transport, response to abiotic stimulus
xenobiotic-transporting ATPase activity ->
xenobiotic-transporting ATPase activity
plasma membrane ->
plasma membrane
YAP6
YER062CHOR2carbohydrate metabolism, response to osmotic stress, glycerol biosynthesis ->
carbohydrate metabolism, response to abiotic stimulus, alcohol metabolism, energy derivation by oxidation of organic compounds, glycerol ether metabolism, lipid metabolism, biosynthesis
glycerol-1-phosphatase activity ->
glycerol-1-phosphatase activity
MTH1
|YDR226W|ADK1cell proliferation ->
cell proliferation
adenylate kinase activity ->
adenylate kinase activity
cytoplasm, mitochondrial intermembrane space ->
cytoplasm
PUT3
|YDL048C|STP4HIR2
YOR273CTPO4polyamine transport ->
transport
spermine transporter activity, spermidine transporter activity ->
spermine transporter activity, spermidine transporter activity
plasma membrane, vacuolar membrane ->
plasma membrane, cytoplasm
ARO80, BAS1, FZF1, HIR1, IME4, NRG1, PDR1, PHO4, SFP1, SKN7, STP1
YLR121CYPS3protein metabolism ->
protein metabolism
aspartic-type endopeptidase activity ->
aspartic-type endopeptidase activity
plasma membrane ->
plasma membrane
CIN5, SWI4, YAP6
Main:response to abiotic stimulus (0.33)adenylate kinase activity (0.20)cytoplasm (0.60)MTH1 YAP6 (0.29)
Score:0.130.000.600.095
P-value:3.758E-01 (response to abiotic stimulus)5.825E-01 (hydrolase activity)8.418E-02 (plasma membrane)1.381E-01 (MTH1)

mRRPE(1) AND PAC(1) AND MCM1'(1) => SimExpr(YGL029W) OR SimExpr(other) : 13 5

    EXPR: (0.133) mRRPE (P < 0.000) PAC (P < 0.007) MCM1' (P < 0.000)

ORFSYMBOLPFCTF
YMR049CERB1rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RTG3
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YML125CNO SYMBOLMAL13, MSN4, NDD1, RME1, SWI5
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YML093WUTP14processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
|YBR267W|NO SYMBOL
YPL043WNOP4rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
|YDR279W|RNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YGL169WSUA5cell growth and/or maintenance ->
cell growth and/or maintenance
ABF1
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
|YIL122W|POG1re-entry into mitotic cell cycle after pheromone arrest ->
cell growth and/or maintenance, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, CIN5, NRG1, RLM1, SMP1, YAP6
|YHR128W|FUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
CIN5
YER082CUTP7processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
CHA4
YCR016WNO SYMBOL
|YDR399W|HPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
DNA binding, RNA binding
nucleolus, nucleus ->
nucleus
YDR365CNO SYMBOLABF1, MSS11, YJL206C
Main:cell growth and/or maintenance (0.77)RNA binding (0.56)nucleus (1.00)ABF1 (0.30)
Score:0.790.311.000.133
P-value:5.573E-07 (rRNA processing)4.411E-02 (transferase activity\, transferring pentosyl groups)2.809E-05 (nucleolus)1.000E+00

ALPHA1'(1) AND mRRPE(1) AND PAC(1) AND MCM1'(1) => SimExpr(YGL029W) OR SimExpr(other) : 9 2

    EXPR: (0.122) ALPHA1' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.004) MCM1' (P < 0.000)

ORFSYMBOLPFCTF
YMR049CERB1rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RTG3
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleolus
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
small nuclear ribonucleoprotein complex, nucleolus, ribonucleoprotein complex
ABF1, SWI6
YML093WUTP14processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleolus
|YDR279W|RNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YGL169WSUA5cell growth and/or maintenance ->
cell growth and/or maintenance
ABF1
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
|YHR128W|FUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
CIN5
YER082CUTP7processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
CHA4
YCR016WNO SYMBOL
Main:cell growth and/or maintenance (0.78)RNA binding (0.60)nucleolus (1.00)ABF1 SWI6 (0.29)
Score:0.750.301.000.095
P-value:6.837E-06 (rRNA processing)1.946E-02 (snoRNA binding)3.270E-04 (nucleolus)4.564E-01 (SWI6)

SFF'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YGL029W) OR SimExpr(other) : 33 14

    EXPR: (0.138) SFF' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.000)

ORFSYMBOLPFCTF
YNR053CNOG2mRNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, nucleolus, nucleoplasm ->
nucleus, nucleoplasm
ABF1, AZF1
YML125CNO SYMBOLMAL13, MSN4, NDD1, RME1, SWI5
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YDR101CARX1ribosomal large subunit biogenesis ->
cell organization and biogenesis
nucleoplasm, cytoplasm ->
nucleus, cytoplasm
IXR1, RFX1
YNL308CKRI1ribosome biogenesis ->
cell organization and biogenesis
nucleolus ->
nucleus
|YDR279W|RNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
|YOR359W|VTS1protein-vacuolar targeting ->
cell organization and biogenesis, protein metabolism, transport
intracellular transporter activity ->
transporter activity
cytosol ->
cytoplasm
RAP1
|YER002W|NOP16ribosomal large subunit biogenesis ->
cell organization and biogenesis
nucleolus, nucleus ->
nucleus
IME4, NDD1, RTG3, UGA3
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
lipid biosynthesis, biosynthesis, membrane lipid metabolism, protein metabolism, lipoprotein metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
cytoplasm, endomembrane system
SWI5
YKL056CNO SYMBOL
YOR078WBUD21processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YGR245CSDA1actin cytoskeleton organization and biogenesis, start control point of mitotic cell cycle ->
cell organization and biogenesis, cell proliferation
nucleus ->
nucleus
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YJL109CUTP10processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
|YJL069C|UTP18ABF1
YKL014CNO SYMBOLABF1
|YER110C|KAP123protein-nucleus import ->
protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YCL059CKRR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YNL075WIMP4rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
rRNA primary transcript binding ->
RNA binding
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
USV1
|YCR072C|NO SYMBOLYFL044C
YCR016WNO SYMBOL
|YLR249W|YEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YDR449CUTP6processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YGR187CHGH1ABF1, HAP3, HIR1, RCS1, RTG1
YGL016WKAP122protein-nucleus import, response to drug ->
response to abiotic stimulus, protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore ->
cytoplasm, nucleus, integral to membrane, endomembrane system
MSN2
YJL138CTIF2translational initiation, regulation of translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
translation factor activity\, nucleic acid binding, RNA binding
ribosome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
PHD1
YHR052WCIC1protein catabolism ->
catabolism, protein metabolism
protein binding\, bridging ->
protein binding\, bridging
nucleolus, proteasome complex (sensu Eukarya) ->
nucleus, cytoplasm
HAP4, MATa1
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
MATa1, RCS1, RTG3, SWI5
YNL112WDBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Fungi)
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
YLR129WDIP2processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ZMS1
|YHR169W|DBP835S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
|YNR046W|NO SYMBOLABF1
|YIL122W|POG1re-entry into mitotic cell cycle after pheromone arrest ->
cell proliferation, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, CIN5, NRG1, RLM1, SMP1, YAP6
|YCR090C|NO SYMBOL
YNL132WKRE33
|YEL026W|SNU13mRNA splicing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
pre-mRNA splicing factor activity ->
RNA binding
small nucleolar ribonucleoprotein complex, nucleolus, small nuclear ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
|YBR104W|YMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
YMR290CHAS1nucleolus, nuclear membrane ->
nucleus, endomembrane system
RAP1
YGL078CDBP3ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
YDL063CNO SYMBOLHAL9, HAP2, MOT3
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YGR145WENP2
YLR222CUTP13processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1
Main:cell organization and biogenesis (0.67)RNA binding (0.58)nucleus (0.81)ABF1 (0.27)
Score:0.530.370.750.108
P-value:1.799E-12 (ribosome biogenesis)1.162E-04 (RNA helicase activity)1.235E-15 (nucleolus)6.251E-01 (ABF1)

SFF(1) AND mRRPE(1) AND PAC(1) => SimExpr(YGL029W) OR SimExpr(other) : 26 11

    EXPR: (0.133) SFF (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.000)

ORFSYMBOLPFCTF
YNR053CNOG2mRNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, nucleolus, nucleoplasm ->
nucleus, nucleoplasm
ABF1, AZF1
YML125CNO SYMBOLMAL13, MSN4, NDD1, RME1, SWI5
YDR101CARX1ribosomal large subunit biogenesis ->
cell organization and biogenesis
nucleoplasm, cytoplasm ->
nucleus, cytoplasm
IXR1, RFX1
|YDR279W|RNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YDR496CPUF6RFX1
|YOR359W|VTS1protein-vacuolar targeting ->
cell organization and biogenesis, protein metabolism, transport
intracellular transporter activity ->
transporter activity
cytosol ->
cytoplasm
RAP1
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
lipid biosynthesis, biosynthesis, membrane lipid metabolism, protein metabolism, lipoprotein metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
cytoplasm, endomembrane system
SWI5
YOR078WBUD21processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YJL109CUTP10processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
|YJL069C|UTP18ABF1
YKL014CNO SYMBOLABF1
|YER110C|KAP123protein-nucleus import ->
protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YCL059CKRR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
|YCR072C|NO SYMBOLYFL044C
YCR016WNO SYMBOL
|YLR249W|YEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YDR449CUTP6processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YGR187CHGH1ABF1, HAP3, HIR1, RCS1, RTG1
YML093WUTP14processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YGL016WKAP122protein-nucleus import, response to drug ->
response to abiotic stimulus, protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore ->
cytoplasm, nucleus, integral to membrane, endomembrane system
MSN2
YJL138CTIF2translational initiation, regulation of translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
translation factor activity\, nucleic acid binding, RNA binding
ribosome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
PHD1
|YMR259C|NO SYMBOLARG80, GCR2, GTS1, HIR1, SRD1
YHR052WCIC1protein catabolism ->
catabolism, protein metabolism
protein binding\, bridging ->
protein binding\, bridging
nucleolus, proteasome complex (sensu Eukarya) ->
nucleus, cytoplasm
HAP4, MATa1
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
MATa1, RCS1, RTG3, SWI5
|YHR169W|DBP835S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
|YCR090C|NO SYMBOL
|YBR104W|YMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
YMR290CHAS1nucleolus, nuclear membrane ->
nucleus, endomembrane system
RAP1
YGL078CDBP3ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
YDL063CNO SYMBOLHAL9, HAP2, MOT3
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YGR145WENP2
YLR222CUTP13processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1
Main:cell organization and biogenesis (0.64)RNA binding (0.58)nucleus (0.78)ABF1 (0.24)
Score:0.550.390.770.093
P-value:1.430E-08 (rRNA processing)1.059E-04 (snoRNA binding)3.690E-11 (nucleolus)1.000E+00

ALPHA1'(1) AND SFF'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YGL029W) OR SimExpr(other) : 21 8

    EXPR: (0.136) ALPHA1' (P < 0.000) SFF' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.001)

ORFSYMBOLPFCTF
YNR053CNOG2mRNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, nucleolus, nucleoplasm ->
nucleus, nucleoplasm
ABF1, AZF1
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YNL308CKRI1ribosome biogenesis ->
cell organization and biogenesis
nucleolus ->
nucleus
|YDR279W|RNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
|YOR359W|VTS1protein-vacuolar targeting ->
cell organization and biogenesis, protein metabolism, transport
intracellular transporter activity ->
transporter activity
cytosol ->
cytoplasm
RAP1
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
lipid biosynthesis, biosynthesis, membrane lipid metabolism, protein metabolism, lipoprotein metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
cytoplasm, endomembrane system
SWI5
YOR078WBUD21processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YGR245CSDA1actin cytoskeleton organization and biogenesis, start control point of mitotic cell cycle ->
cell organization and biogenesis, cell proliferation
nucleus ->
nucleus
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YJL109CUTP10processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YKL014CNO SYMBOLABF1
|YER110C|KAP123protein-nucleus import ->
protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YCL059CKRR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YNL075WIMP4rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
rRNA primary transcript binding ->
RNA binding
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
USV1
|YCR072C|NO SYMBOLYFL044C
YCR016WNO SYMBOL
YDR449CUTP6processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
MATa1, RCS1, RTG3, SWI5
YNL112WDBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Fungi)
YOR095CRKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
|YHR169W|DBP835S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
|YCR090C|NO SYMBOL
YNL132WKRE33
|YBR104W|YMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YLR222CUTP13processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1
Main:cell organization and biogenesis (0.75)RNA binding (0.62)nucleus (0.80)ABF1 (0.31)
Score:0.640.420.660.150
P-value:4.294E-10 (rRNA processing)9.168E-04 (snoRNA binding)7.110E-12 (nucleolus)1.000E+00

SFF'(1) AND mRRPE(1) AND PAC(1) AND MCM1'(1) => SimExpr(YGL029W) OR SimExpr(other) : 6 2

    EXPR: (0.132) SFF' (P < 0.000) mRRPE (P < 0.008) PAC (P < 0.034) MCM1' (P < 0.000)

ORFSYMBOLPFCTF
YML125CNO SYMBOLMAL13, MSN4, NDD1, RME1, SWI5
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
rRNA modification, rRNA processing
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
|YDR279W|RNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YCR016WNO SYMBOL
YGR280CPXR135S primary transcript processing, snRNA processing ->
rRNA processing, snRNA processing
RNA binding ->
RNA binding
nucleolus ->
nucleus
YGL029WCGR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleus
YOR095CRKI1pentose-phosphate shunt ->
glucose catabolism, main pathways of carbohydrate metabolism, nicotinamide metabolism
ribose-5-phosphate isomerase activity ->
ribose-5-phosphate isomerase activity
FHL1, FKH2, RAP1
|YIL122W|POG1re-entry into mitotic cell cycle after pheromone arrest ->
re-entry into mitotic cell cycle, conjugation with cellular fusion, response to pheromone
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, CIN5, NRG1, RLM1, SMP1, YAP6
Main:rRNA processing (0.60)RNA binding (0.33)nucleus (1.00)RLM1 SWI6 (0.40)
Score:0.300.001.000.200
P-value:2.861E-02 (rRNA processing)2.000E+001.986E-02 (nucleolus)2.636E-01 (RLM1)

SFF(1) AND mRRPE(1) AND PAC(1) AND MCM1'(1) => SimExpr(YGL029W) OR SimExpr(other) : 5 1

    EXPR: (0.112) SFF (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.003) MCM1' (P < 0.000)

ORFSYMBOLPFCTF
YML125CNO SYMBOLMAL13, MSN4, NDD1, RME1, SWI5
|YDR279W|RNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YCR016WNO SYMBOL
YGR280CPXR135S primary transcript processing, snRNA processing ->
rRNA processing, snRNA processing
RNA binding ->
RNA binding
nucleolus ->
nucleolus
YML093WUTP14processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
YGL029WCGR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
Main:rRNA processing (1.00)RNA binding (1.00)nucleolus (1.00)GCR2 (0.50)
Score:1.001.001.000.000
P-value:1.011E-02 (rRNA processing)3.853E-01 (RNA binding)7.533E-03 (nucleolus)3.288E-01 (THI2)

ALPHA1'(1) AND SFF'(1) AND mRRPE(1) AND PAC(1) AND MCM1'(1) => SimExpr(YGL029W) OR SimExpr(other) : 5 1

    EXPR: (0.116) ALPHA1' (P < 0.000) SFF' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.009) MCM1' (P < 0.000)

ORFSYMBOLPFCTF
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
rRNA modification, rRNA processing
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
small nuclear ribonucleoprotein complex, nucleolus, ribonucleoprotein complex
ABF1, SWI6
|YDR279W|RNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YCR016WNO SYMBOL
YGR280CPXR135S primary transcript processing, snRNA processing ->
rRNA processing, snRNA processing
RNA binding ->
RNA binding
nucleolus ->
nucleolus
YGL029WCGR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YOR095CRKI1pentose-phosphate shunt ->
glucose catabolism, main pathways of carbohydrate metabolism, nicotinamide metabolism
ribose-5-phosphate isomerase activity ->
ribose-5-phosphate isomerase activity
FHL1, FKH2, RAP1
Main:rRNA processing (0.75)RNA binding (0.50)nucleolus (1.00)SWI6 (0.67)
Score:0.500.001.000.333
P-value:1.071E-02 (rRNA processing)2.000E+007.533E-03 (nucleolus)1.047E-01 (SWI6)

ALPHA1(1) AND ALPHA1'(1) AND SFF'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YGL029W) OR SimExpr(other) : 6 3

    EXPR: (0.134) ALPHA1' (P < 0.000) SFF' (P < 0.000) mRRPE (P < 0.007) PAC (P < 0.029) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
protein amino acid glycosylation, phosphoinositide biosynthesis, protein lipidation, phosphoinositide metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network
SWI5
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YJL109CUTP10processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
YNL075WIMP4rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
rRNA modification, rRNA processing
rRNA primary transcript binding ->
RNA binding
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex ->
nucleolus, small nuclear ribonucleoprotein complex, ribonucleoprotein complex
USV1
|YCR072C|NO SYMBOLYFL044C
YGL029WCGR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YOR095CRKI1pentose-phosphate shunt ->
glucose catabolism, main pathways of carbohydrate metabolism, nicotinamide metabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
|YHR169W|DBP835S primary transcript processing ->
rRNA processing
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleolus
YJL033WHCA435S primary transcript processing ->
rRNA processing
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleolus
HIR2, USV1
Main:rRNA processing (0.71)RNA binding (0.67)nucleolus (0.83)USV1 (0.33)
Score:0.480.400.670.067
P-value:6.428E-05 (rRNA processing)2.135E-02 (ATP dependent RNA helicase activity)9.523E-05 (nucleolus)5.402E-02 (USV1)

RAP1(1) AND ALPHA1(1) AND SCB(1) => SimExpr(YGR085C) OR SimExpr(other) : 5 1

    EXPR: (0.100) SCB (P < 0.000) RAP1 (P < 0.027) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, RAP1
|YPR080W|TEF1translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
FHL1, PDR1, RAP1, YAP5
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, MIG1
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YHL033CRPL8Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.67)ribosome (1.00)FHL1 (0.83)
Score:1.000.471.000.667
P-value:3.792E-05 (protein biosynthesis)1.921E-03 (structural constituent of ribosome)3.416E-06 (ribosome)2.721E-06 (FHL1)

RAP1(1) AND ALPHA1(1) AND SFF(1) AND SCB(1) => SimExpr(YGR085C) : 5

    EXPR: (0.086) SFF (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.008) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, MIG1
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YHL033CRPL8Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.80)ribosome (1.00)FHL1 (0.80)
Score:1.000.601.000.600
P-value:3.152E-04 (protein biosynthesis)4.489E-04 (structural constituent of ribosome)2.344E-05 (cytosolic large ribosomal subunit (sensu Eukarya))6.441E-05 (FHL1)

RAP1(1) AND ALPHA1(1) AND SFF'(1) AND SCB(1) => SimExpr(YGR085C) : 5

    EXPR: (0.086) SFF' (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.010) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, MIG1
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YHL033CRPL8Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.80)ribosome (1.00)FHL1 (0.80)
Score:1.000.601.000.600
P-value:3.152E-04 (protein biosynthesis)4.489E-04 (structural constituent of ribosome)2.344E-05 (cytosolic large ribosomal subunit (sensu Eukarya))6.441E-05 (FHL1)

mRRPE(1) AND PAC(1) => SimExpr(YNL110C) OR SimExpr(other) : 68 22

    EXPR: (0.132) mRRPE (P < 0.000) PAC (P < 0.000)

ORFSYMBOLPFCTF
YNR053CNOG2mRNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, nucleolus, nucleoplasm ->
nucleus, nucleoplasm
ABF1, AZF1
YML125CNO SYMBOLMAL13, MSN4, NDD1, RME1, SWI5
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YGL171WROK135S primary transcript processing, mRNA splicing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity, ATPase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
RGT1
YDR184CATC1response to stress, polar budding ->
response to stress, asexual reproduction
nucleus ->
nucleus
ARO80, GLN3, SIP4, SKO1
|YJR070C|NO SYMBOLGAT3, YAP5
YDR101CARX1ribosomal large subunit biogenesis ->
cell growth and/or maintenance
nucleoplasm, cytoplasm ->
nucleus, cytoplasm
IXR1, RFX1
YBR267WNO SYMBOL
YPL043WNOP4rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YNL308CKRI1ribosome biogenesis ->
cell growth and/or maintenance
nucleolus ->
nucleus
YDR279WRNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YDR496CPUF6RFX1
YKL172WEBP2rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
ABF1, FZF1, RFX1
YMR014WBUD22bud site selection ->
cell growth and/or maintenance
nucleus ->
nucleus
CUP9, HAL9, HIR2, LEU3, NDD1, RLM1, ROX1, SMP1, YAP6
YGL169WSUA5cell growth and/or maintenance ->
cell growth and/or maintenance
ABF1
YHR089CGAR1rRNA modification, 35S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
RNA binding ->
RNA binding
nucleolus, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
CBF1, FZF1
YOR272WYTM1chromosome organization and biogenesis (sensu Eukarya), ribosomal large subunit biogenesis ->
cell growth and/or maintenance
nucleus, nucleolus ->
nucleus
LEU3, PUT3, REB1
|YOR359W|VTS1protein-vacuolar targeting ->
protein metabolism, cell growth and/or maintenance
intracellular transporter activity ->
transporter activity
cytosol ->
cytoplasm
RAP1
YER002WNOP16ribosomal large subunit biogenesis ->
cell growth and/or maintenance
nucleolus, nucleus ->
nucleus
IME4, NDD1, RTG3, UGA3
YLR002CNOC3DNA replication initiation, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
chromatin binding, protein binding ->
DNA binding, protein binding
nucleus, nucleolus ->
nucleus
HIR1, IXR1, RCS1
|YNL175C|NOP13RNA binding ->
RNA binding
nucleolus, nucleoplasm ->
nucleus
INO2, INO4
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
lipid biosynthesis, biosynthesis, membrane lipid metabolism, protein metabolism, lipoprotein metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
cytoplasm, endomembrane system
SWI5
|YNL209W|SSB2protein biosynthesis ->
biosynthesis, protein metabolism
chaperone activity, ATPase activity ->
chaperone activity, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
polysome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
ABF1, RFX1
|YKL056C|NO SYMBOL
YOR078WBUD21processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YMR229CRRP5rRNA processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding, snoRNA binding ->
RNA binding
nucleolus, nucleolus organizer complex ->
nucleus
FHL1, RAP1
YGR245CSDA1actin cytoskeleton organization and biogenesis, start control point of mitotic cell cycle ->
cell growth and/or maintenance
nucleus ->
nucleus
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YFR001WLOC1ribosomal large subunit biogenesis ->
cell growth and/or maintenance
mRNA binding ->
RNA binding
nucleus ->
nucleus
ARG80, GAL4, GTS1, HAP4, HIR1, LEU3, MSN2, MSN4, RCS1, RLM1, SWI4
YJL109CUTP10processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
|YJL069C|UTP18ABF1
YKL014CNO SYMBOLABF1
YDR161WNO SYMBOL
|YER110C|KAP123protein-nucleus import ->
protein metabolism, cell growth and/or maintenance
protein carrier activity ->
protein binding
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YCL059CKRR1ribosome biogenesis, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YNL075WIMP4rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
rRNA primary transcript binding ->
RNA binding
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
USV1
YMR239CRNT135S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ribonuclease III activity ->
hydrolase activity\, acting on ester bonds, RNA binding
nucleolus ->
nucleus
|YCR072C|NO SYMBOLYFL044C
YGL099WLSG1conjugation with cellular fusion, sporulation (sensu Saccharomyces), ribosome nucleus export ->
conjugation, protein metabolism, cell growth and/or maintenance, sexual reproduction
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
cytoplasm ->
cytoplasm
PHO4
YCR016WNO SYMBOL
|YLR249W|YEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YDR399WHPT1purine nucleotide biosynthesis ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
hypoxanthine phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
YBR247CENP1processing of 20S pre-rRNA, rRNA processing, cell growth and/or maintenance ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
nucleolus, nucleus ->
nucleus
|YPR010C|RPA135transcription from Pol I promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA-directed RNA polymerase activity ->
transferase activity\, transferring phosphorus-containing groups
DNA-directed RNA polymerase I complex ->
nucleus
ROX1, SIG1
YJL148WRPA34transcription from Pol I promoter ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
DNA-directed RNA polymerase activity ->
transferase activity\, transferring phosphorus-containing groups
DNA-directed RNA polymerase I complex, nucleus, nucleolus ->
nucleus
AZF1, CHA4, CUP9, DAL81, DIG1, FZF1, GCR1, GCR2, GLN3, HAL9, HAP2, HAP3, HMS1, LEU3, MAC1, MBP1, MET31, MOT3, NDD1, PDR1, PHD1, REB1, RLM1, RME1, ROX1, RPH1, RTS2, SKN7, SWI5, YAP6, ZAP1
YDR449CUTP6processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YGR159CNSR1ribosomal small subunit assembly and maintenance, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
single-stranded DNA binding, RNA binding ->
DNA binding, RNA binding
nucleolus, nucleus ->
nucleus
YMR049CERB1rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RTG3
YPL266WDIM1rRNA modification, 35S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
rRNA (adenine-N6\,N6-)-dimethyltransferase activity ->
transferase activity\, transferring one-carbon groups
nucleolus ->
nucleus
ARG81, STP2
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YDR083WRRP8rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
methyltransferase activity ->
transferase activity\, transferring one-carbon groups
nucleolus ->
nucleus
MOT3
YJR002WMPP10rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex, nucleolus, nucleus ->
nucleus, ribonucleoprotein complex
YGR187CHGH1ABF1, HAP3, HIR1, RCS1, RTG1
YPR144CNOC4ribosome biogenesis ->
cell growth and/or maintenance
nucleus ->
nucleus
HIR1
YML093WUTP14processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YHR196WUTP9processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex, nucleolus, nucleus ->
nucleus, ribonucleoprotein complex
|YGL016W|KAP122protein-nucleus import, response to drug ->
response to abiotic stimulus, protein metabolism, cell growth and/or maintenance
protein carrier activity ->
protein binding
cytoplasm, nuclear pore ->
cytoplasm, nucleus, integral to membrane, endomembrane system
MSN2
|YJL138C|TIF2translational initiation, regulation of translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
translation factor activity\, nucleic acid binding, RNA binding
ribosome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
PHD1
YMR259CNO SYMBOLARG80, GCR2, GTS1, HIR1, SRD1
YHR052WCIC1protein catabolism ->
catabolism, protein metabolism
protein binding\, bridging ->
protein binding
nucleolus, proteasome complex (sensu Eukarya) ->
nucleus, cytoplasm
HAP4, MATa1
YJL050WMTR435S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
MATa1, RCS1, RTG3, SWI5
|YNL112W|DBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Fungi)
YGR272CNO SYMBOLREB1, STP2
|YMR310C|NO SYMBOL
|YGR162W|TIF4631translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
HSF1
|YOR095C|RKI1pentose-phosphate shunt ->
coenzymes and prosthetic group metabolism, alcohol metabolism, water-soluble vitamin metabolism, carbohydrate metabolism, energy derivation by oxidation of organic compounds, catabolism
ribose-5-phosphate isomerase activity ->
intramolecular isomerase activity
FHL1, FKH2, RAP1
YLR129WDIP2processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ZMS1
YER006WNUG1rRNA processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus, nucleus ->
nucleus
YHR169WDBP835S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
|YNR046W|NO SYMBOLABF1
YNL110CNOP15ribosomal large subunit biogenesis ->
cell growth and/or maintenance
nucleus, nucleolus ->
nucleus
|YIL122W|POG1re-entry into mitotic cell cycle after pheromone arrest ->
cell growth and/or maintenance, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
nucleus
ASH1, CIN5, NRG1, RLM1, SMP1, YAP6
|YHR128W|FUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
CIN5
|YCR090C|NO SYMBOL
YNL132WKRE33
|YEL026W|SNU13mRNA splicing, processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
pre-mRNA splicing factor activity ->
RNA binding
small nucleolar ribonucleoprotein complex, nucleolus, small nuclear ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YBR104WYMC2transport ->
cell growth and/or maintenance
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YER082CUTP7processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
CHA4
YNR024WNO SYMBOL
YMR131CRRB1ribosome biogenesis ->
cell growth and/or maintenance
nucleolus ->
nucleus
FZF1, MATa1, RGT1
YMR290CHAS1nucleolus, nuclear membrane ->
nucleus, endomembrane system
RAP1
YAL059WECM1cell wall organization and biogenesis ->
cell growth and/or maintenance
MOT3
YGL078CDBP3ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
YDL063CNO SYMBOLHAL9, HAP2, MOT3
YJL033WHCA435S primary transcript processing ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YGR145WENP2
YDR365CNO SYMBOLABF1, MSS11, YJL206C
YLR222CUTP13processing of 20S pre-rRNA ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1
Main:cell growth and/or maintenance (0.80)RNA binding (0.57)nucleus (0.85)ABF1 (0.20)
Score:0.740.360.790.098
P-value:9.716E-37 (ribosome biogenesis)9.459E-10 (snoRNA binding)5.497E-40 (nucleolus)1.000E+00

LYS14(1) AND mRRPE(1) AND PAC(1) => SimExpr(YNL110C) OR SimExpr(other) : 7 2

ALPHA1(1) AND SWI5(1) AND MCB(1) => SimExpr(YPR185W) OR SimExpr(other) : 7 3

RAP1(1) AND SWI5(1) AND SCB(1) => SimExpr(YMR194W) OR SimExpr(other) : 5 1

    EXPR: (0.091) SWI5 (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.020)

ORFSYMBOLPFCTF
YLR344WRPL26Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
|YPR080W|TEF1translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
FHL1, PDR1, RAP1, YAP5
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
YOR369CRPS12protein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YMR194WRPL36Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
ARG80, ARO80, BAS1, CUP9, FHL1, HAL9, HAP4, HAP5, HMS1, MET31, NRG1, RAP1, RCS1, RME1, STP2
Main:protein biosynthesis (1.00)structural constituent of ribosome (0.67)ribosome (1.00)FHL1 (0.83)
Score:1.000.471.000.667
P-value:2.007E-05 (protein biosynthesis)2.134E-03 (structural constituent of ribosome)3.416E-06 (ribosome)6.123E-06 (FHL1)

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YMR194W) OR SimExpr(other) : 8 3

    EXPR: (0.103) SFF' (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.008)

ORFSYMBOLPFCTF
YLR344WRPL26Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, RAP1
|YGR260W|TNA1nicotinamide mononucleotide transport ->
nicotinamide mononucleotide transport
nicotinamide mononucleotide permease activity ->
nicotinamide mononucleotide permease activity
integral to plasma membrane ->
integral to plasma membrane
HIR2, SUM1
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, GAT3, RAP1
|YBR118W|TEF2translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
FHL1, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
protein biosynthesis, ribosome biogenesis and assembly
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, MIG1
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
ribosome
INO2, INO4
YOR369CRPS12protein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
cytosol, eukaryotic 43S pre-initiation complex, eukaryotic 48S initiation complex, ribosome
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YMR194WRPL36Aprotein biosynthesis ->
protein biosynthesis
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
ARG80, ARO80, BAS1, CUP9, FHL1, HAL9, HAP4, HAP5, HMS1, MET31, NRG1, RAP1, RCS1, RME1, STP2
|YNL024C|NO SYMBOLGRF10(Pho2)
YHL033CRPL8Aprotein biosynthesis ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytosol, ribosome
FHL1
Main:protein biosynthesis (0.90)structural constituent of ribosome (0.70)ribosome (0.90)FHL1 (0.73)
Score:0.800.490.800.509
P-value:2.392E-06 (protein biosynthesis)9.541E-06 (structural constituent of ribosome)8.274E-08 (ribosome)5.790E-09 (FHL1)

RAP1(1) AND SFF(1) AND SCB(1) => SimExpr(YMR194W) OR SimExpr(other) : 8 2

    EXPR: (0.098) SFF (P < 0.000) SCB (P < 0.000) RAP1 (P < 0.007)

ORFSYMBOLPFCTF
YLR344WRPL26Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
|YLR208W|SEC13nonselective vesicle assembly, ER to Golgi transport, ER-associated protein catabolism ->
vesicle-mediated transport, intracellular transport, macromolecule catabolism, secretory pathway, protein metabolism
cytoplasm, COPII vesicle coat, nuclear pore, extrinsic to plasma membrane ->
nucleus, extrinsic to membrane, cytoplasm, membrane coat, integral to membrane, endomembrane system, plasma membrane
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
macromolecule biosynthesis, cytoplasm organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
macromolecule biosynthesis, cytoplasm organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
YLR249WYEF3translational elongation ->
macromolecule biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YOR369CRPS12protein biosynthesis ->
macromolecule biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YMR194WRPL36Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
ARG80, ARO80, BAS1, CUP9, FHL1, HAL9, HAP4, HAP5, HMS1, MET31, NRG1, RAP1, RCS1, RME1, STP2
|YNL024C|NO SYMBOLGRF10(Pho2)
YHL033CRPL8Aprotein biosynthesis ->
macromolecule biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
Main:protein metabolism (1.00)structural constituent of ribosome (0.88)cytoplasm (1.00)FHL1 (0.78)
Score:1.000.751.000.583
P-value:1.650E-05 (protein biosynthesis)2.563E-06 (structural constituent of ribosome)5.336E-07 (cytosolic large ribosomal subunit (sensu Eukarya))1.258E-07 (FHL1)

RAP1(1) AND SFF(1) AND SWI5(1) AND SCB(1) => SimExpr(YMR194W) : 5

RAP1(1) AND SFF'(1) AND SWI5(1) AND SCB(1) => SimExpr(YMR194W) : 5

RAP1(1) AND SCB(1) => SimExpr(YHL033C) OR SimExpr(other) : 9 4

    EXPR: (0.113) SCB (P < 0.000) RAP1 (P < 0.027)

ORFSYMBOLPFCTF
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YGR260WTNA1nicotinamide mononucleotide transport ->
transport
nicotinamide mononucleotide permease activity ->
nicotinamide mononucleotide permease activity
integral to plasma membrane ->
integral to membrane, plasma membrane
HIR2, SUM1
|YLR208W|SEC13nonselective vesicle assembly, ER to Golgi transport, ER-associated protein catabolism ->
macromolecule catabolism, transport, protein metabolism
cytoplasm, COPII vesicle coat, nuclear pore, extrinsic to plasma membrane ->
nucleus, extrinsic to membrane, cytoplasm, membrane coat, integral to membrane, endomembrane system, plasma membrane
YPL131WRPL5protein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1
|YBR118W|TEF2translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
|YPR080W|TEF1translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, PDR1, RAP1, YAP5
YGR085CRPL11Bprotein biosynthesis, ribosomal large subunit assembly and maintenance ->
biosynthesis, cell organization and biogenesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, MIG1
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YOR369CRPS12protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
YMR194WRPL36Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
ARG80, ARO80, BAS1, CUP9, FHL1, HAL9, HAP4, HAP5, HMS1, MET31, NRG1, RAP1, RCS1, RME1, STP2
|YNL024C|NO SYMBOLGRF10(Pho2)
YHL033CRPL8Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1
Main:protein metabolism (0.92)structural constituent of ribosome (0.64)cytoplasm (0.92)FHL1 (0.75)
Score:0.850.440.850.545
P-value:1.318E-06 (protein biosynthesis)4.455E-05 (structural constituent of ribosome)4.008E-08 (ribosome)7.806E-10 (FHL1)

RAP1(1) AND ALPHA1(1) AND SCB(1) => SimExpr(YHL033C) OR SimExpr(other) : 5 1

RAP1(1) AND ALPHA1(1) AND SFF'(1) AND SCB(1) => SimExpr(YHL033C) : 5

RAP1(1) AND ALPHA1(1) AND SFF(1) AND SCB(1) => SimExpr(YHL033C) : 5

RAP1(1) AND ALPHA1(1) AND mRRPE(1) => SimExpr(YMR116C) OR SimExpr(other) : 5 2

    EXPR: (0.128) mRRPE (P < 0.000) RAP1 (P < 0.174) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
|YKL072W|STB6ARG81, ARO80, BAS1, CIN5, GCN4, GLN3, HAP3, MCM1, PHD1, REB1, RLM1, YJL206C, ZAP1
YDL130WRPP1Bprotein biosynthesis, translational elongation ->
protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAL4, RAP1, RFX1
YMR116CASC1cytoplasm ->
cytoplasm
FHL1, RAP1
YMR013CSEC59protein-ER targeting, protein amino acid glycosylation ->
organelle organization and biogenesis, protein biosynthesis, intracellular protein transport, secretory pathway, protein modification, glycoprotein metabolism, protein metabolism
dolichol kinase activity ->
dolichol kinase activity
membrane ->
membrane
FHL1, NDD1, RAP1, RLM1, RME1
|YPR080W|TEF1translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
FHL1, PDR1, RAP1, YAP5
YLR249WYEF3translational elongation ->
protein biosynthesis
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YBR048WRPS11Bprotein biosynthesis, ribosomal small subunit assembly and maintenance, regulation of translational fidelity ->
ribosome biogenesis and assembly, protein biosynthesis
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
GAL4, HAP4, LEU3, MET31, MSN1
Main:protein biosynthesis (1.00)translation elongation factor activity (0.40)cytoplasm (0.83)RAP1 FHL1 (0.57)
Score:1.000.200.670.381
P-value:9.360E-05 (translational elongation)4.519E-03 (translation elongation factor activity)1.212E-02 (ribosome)1.050E-03 (FHL1)

RAP1(1) AND SCB(1) => SimExpr(YOR369C) OR SimExpr(other) : 9 4

RAP1(1) AND SWI5(1) AND SCB(1) => SimExpr(YOR369C) OR SimExpr(other) : 5 1

RAP1(1) AND SFF'(1) AND SCB(1) => SimExpr(YOR369C) OR SimExpr(other) : 9 2

RAP1(1) AND SFF(1) AND SCB(1) => SimExpr(YOR369C) OR SimExpr(other) : 8 2

RAP1(1) AND SFF(1) AND SWI5(1) AND SCB(1) => SimExpr(YOR369C) : 5

RAP1(1) AND SFF'(1) AND SWI5(1) AND SCB(1) => SimExpr(YOR369C) : 5

RAP1(1) AND SCB(1) => SimExpr(YPL131W) OR SimExpr(other) : 9 4

RAP1(1) AND ALPHA1(1) AND SCB(1) => SimExpr(YPL131W) OR SimExpr(other) : 5 1

RAP1(1) AND ALPHA1(1) AND SFF'(1) AND SCB(1) => SimExpr(YPL131W) : 5

RAP1(1) AND ALPHA1(1) AND SFF(1) AND SCB(1) => SimExpr(YPL131W) : 5

RAP1(1) AND SFF(1) AND SWI5(1) => SimExpr(YLR441C) OR SimExpr(other) : 13 6

    EXPR: (0.129) SFF (P < 0.000) SWI5 (P < 0.000) RAP1 (P < 0.184)

ORFSYMBOLPFCTF
|YBR295W|PCA1copper ion homeostasis ->
cell homeostasis
P-type ATPase activity ->
ATPase activity\, coupled to transmembrane movement of substances, P-P-bond-hydrolysis-driven transporter activity, cation transporter activity
membrane ->
membrane
GAL4, SMP1
YKL006WRPL14Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, GRF10(Pho2), GTS1, RAP1
YJL217WNO SYMBOLCIN5, MAC1, PHD1, SWI5, YAP6
YOR312CRPL20Bprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, FKH2, GAT3, RAP1
YLR344WRPL26Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, RAP1
YJR145CRPS4Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya), cytoplasm ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ACE2, CIN5, FHL1, INO4, MTH1, RAP1, YAP6
|YDR406W|PDR15transport ->
transport
ATP-binding cassette (ABC) transporter activity ->
ATPase activity\, coupled to transmembrane movement of substances, P-P-bond-hydrolysis-driven transporter activity
integral to membrane ->
membrane
|YDL184C|RPL41Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, HAL9, HMS1, MAC1, MSS11, RAP1, RME1, SIG1
YLR441CRPS1Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, RAP1, YAP5
YGL115WSNF4regulation of transcription from Pol II promoter, peroxisome organization and biogenesis ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
protein kinase activator activity ->
protein kinase activator activity
plasma membrane, nucleus, cytoplasm ->
membrane, nucleus, cytoplasm
BAS1, CAD1, MAC1, NRG1, PDR1, RAP1, SMP1, YAP5
YLR249WYEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation elongation factor activity
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
|YLR452C|SST2signal transduction, adaptation to pheromone during conjugation with cellular fusion ->
signal transduction, conjugation, perception of external stimulus, sexual reproduction, response to abiotic stimulus
GTPase activator activity ->
GTPase activator activity
plasma membrane ->
membrane
DIG1, FHL1, RAP1, STE12
YOR369CRPS12protein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
ARG80, FHL1, FKH2, LEU3, NDD1, PDR1, RME1, SMP1, YAP6
YNL069CRPL16Bprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, YAP5
YBL087CRPL23Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
FHL1, IXR1, MSS11, PDR1, RAP1, SMP1, SOK2
|YKR092C|SRP40nucleocytoplasmic transport ->
transport
chaperone activity ->
chaperone activity
nucleolus ->
nucleus
CUP9, MET4, RAP1
YMR194WRPL36Aprotein biosynthesis ->
biosynthesis, protein metabolism
RNA binding, structural constituent of ribosome ->
RNA binding, structural constituent of ribosome
cytosolic large ribosomal subunit (sensu Eukarya) ->
cytoplasm, ribonucleoprotein complex
ARG80, ARO80, BAS1, CUP9, FHL1, HAL9, HAP4, HAP5, HMS1, MET31, NRG1, RAP1, RCS1, RME1, STP2
|YBR098W|MMS4DNA repair, meiotic recombination ->
cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
transcription co-activator activity, endonuclease activity ->
transcription co-activator activity, endonuclease activity
nucleus ->
nucleus
YER074WRPS24Aprotein biosynthesis ->
biosynthesis, protein metabolism
structural constituent of ribosome ->
structural constituent of ribosome
cytosolic small ribosomal subunit (sensu Eukarya) ->
eukaryotic 48S initiation complex, cytoplasm, ribonucleoprotein complex
FHL1, GAT3, PDR1, RAP1, RGM1, SMP1, YAP5
Main:biosynthesis (0.67)structural constituent of ribosome (0.61)cytoplasm (0.72)RAP1 (0.76)
Score:0.440.370.570.728
P-value:1.235E-06 (protein biosynthesis)5.371E-08 (structural constituent of ribosome)2.035E-09 (cytosolic ribosome (sensu Eukarya))1.901E-12 (FHL1)

RAP1(1) AND SCB(1) => SimExpr(YLR249W) OR SimExpr(other) : 9 4

RAP1(1) AND SFF(1) AND SWI5(1) AND SCB(1) => SimExpr(YLR249W) : 5

RAP1(1) AND ALPHA1(1) AND SFF(1) AND SCB(1) => SimExpr(YLR249W) : 5

RAP1(1) AND SFF'(1) AND SWI5(1) AND SCB(1) => SimExpr(YLR249W) : 5

RAP1(1) AND SFF(1) AND SWI5(1) AND SCB(1) => SimExpr(YBL087C) : 5

RAP1(1) AND ALPHA1(1) AND SFF'(1) AND SCB(1) => SimExpr(YBL087C) : 5

RAP1(1) AND ALPHA1(1) AND SFF(1) AND SCB(1) => SimExpr(YBL087C) : 5

RAP1(1) AND SFF'(1) AND SWI5(1) AND SCB(1) => SimExpr(YBL087C) : 5

LYS14(1) AND mRRPE(1) AND PAC(1) => SimExpr(YMR290C) OR SimExpr(other) : 8 1

LYS14(1) AND SFF(1) AND mRRPE(1) AND PAC(1) => SimExpr(YMR290C) : 5

    EXPR: (0.106) LYS14 (P < 0.000) SFF (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.000)

ORFSYMBOLPFCTF
YGR280CPXR135S primary transcript processing, snRNA processing ->
rRNA processing, snRNA processing
RNA binding ->
RNA binding
nucleolus ->
nucleolus
YML093WUTP14processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
YMR259CNO SYMBOLARG80, GCR2, GTS1, HIR1, SRD1
YHR052WCIC1protein catabolism ->
protein catabolism
protein binding\, bridging ->
protein binding\, bridging
nucleolus, proteasome complex (sensu Eukarya) ->
nucleolus, cytosol, endoplasmic reticulum, nucleus
HAP4, MATa1
YMR290CHAS1nucleolus, nuclear membrane ->
nucleolus, nuclear membrane
RAP1
Main:rRNA processing (0.67)RNA binding (0.67)nucleolus (1.00)GCR2 (0.33)
Score:0.330.331.000.000
P-value:1.630E-01 (rRNA processing)2.709E-01 (RNA binding)7.963E-05 (nucleolus)3.566E-01 (MATa1)

mRRPE(1) AND PAC(1) => SimExpr(YMR229C) OR SimExpr(other) : 64 26

ALPHA1'(1) AND mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YJL109C) OR SimExpr(other) : 7 3

    EXPR: (0.130) ALPHA1' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.005) SCB (P < 0.000)

ORFSYMBOLPFCTF
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
rRNA modification, rRNA processing
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, SWI6
YDR184CATC1response to stress, polar budding ->
response to stress, polar budding
nucleus ->
nucleus
ARO80, GLN3, SIP4, SKO1
YJR070CNO SYMBOLGAT3, YAP5
|YOR078W|BUD21processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YJL109CUTP10processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YCL059CKRR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleus
YGR280CPXR135S primary transcript processing, snRNA processing ->
rRNA processing, snRNA processing
RNA binding ->
RNA binding
nucleolus ->
nucleus
|YNL112W|DBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Fungi)
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
|YER082C|UTP7processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
CHA4
Main:rRNA processing (0.75)RNA binding (0.83)nucleus (0.78)ABF1 SKO1 (0.33)
Score:0.540.670.580.133
P-value:3.188E-06 (rRNA processing)2.343E-04 (snoRNA binding)6.139E-06 (nucleolus)6.211E-02 (SKO1)

ALPHA1'(1) AND SFF'(1) AND mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YJL109C) OR SimExpr(other) : 5 2

    EXPR: (0.122) ALPHA1' (P < 0.000) SFF' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.001) SCB (P < 0.000)

ORFSYMBOLPFCTF
YOR310CNOP58rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
rRNA modification, rRNA processing
small nuclear ribonucleoprotein complex, small nucleolar ribonucleoprotein complex ->
small nuclear ribonucleoprotein complex, nucleolus, ribonucleoprotein complex
ABF1, SWI6
|YOR078W|BUD21processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YJL109CUTP10processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
YCL059CKRR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YGR280CPXR135S primary transcript processing, snRNA processing ->
rRNA processing, snRNA processing
RNA binding ->
RNA binding
nucleolus ->
nucleolus
|YNL112W|DBP2RNA helicase activity ->
RNA binding
bud neck ->
site of polarized growth (sensu Saccharomyces)
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
mitochondrion, inner membrane
FKH1, FKH2
Main:rRNA processing (0.83)RNA binding (0.80)nucleolus (0.71)ABF1 (0.67)
Score:0.670.600.480.333
P-value:1.127E-05 (rRNA processing)6.477E-03 (snoRNA binding)1.695E-05 (nucleolus)5.107E-01 (SKO1)

ALPHA1(1) AND ALPHA2(1) AND MCB(1) => SimExpr(YOR144C) OR SimExpr(other) : 6 3

    EXPR: (0.132) ALPHA2 (P < 0.000) MCB (P < 0.048) ALPHA1 (P < 0.001)

ORFSYMBOLPFCTF
YNL082WPMS1mismatch repair, meiosis ->
DNA metabolism, cell proliferation
ATPase activity, ATP binding, DNA binding ->
ATP binding, DNA binding, hydrolase activity\, acting on acid anhydrides\, in phosphorus-containing anhydrides
nuclear chromosome ->
intracellular
MTH1
|YOR284W|HUA2RFX1, YAP6
YJL095WBCK1protein amino acid phosphorylation, protein kinase cascade, response to nutrients, establishment of cell polarity (sensu Saccharomyces) ->
phosphorus metabolism, signal transduction, response to extracellular stimulus, cell organization and biogenesis, protein metabolism, response to abiotic stimulus
MAP kinase kinase kinase activity ->
protein kinase activity
intracellular ->
intracellular
YAP1
YPR185WAPG13protein-vacuolar targeting, autophagy ->
cell organization and biogenesis, autophagy, protein metabolism, transport
protein binding ->
protein binding
extrinsic to membrane ->
extrinsic to membrane
MET4, SWI6
YOR144CELG1negative regulation of DNA transposition, negative regulation of DNA recombination ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
YJL206C
YCR065WHCM1spindle assembly, transcription initiation from Pol II promoter ->
cell organization and biogenesis, cell proliferation, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
specific RNA polymerase II transcription factor activity ->
specific RNA polymerase II transcription factor activity
nucleus ->
intracellular
ASH1, HSF1, MBP1, NDD1, PHD1, ROX1, STB1, SWI4
YFR027WECO1sister chromatid cohesion, DNA replication, DNA repair ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, cell proliferation
acetyltransferase activity ->
acyltransferase activity
nuclear chromatin ->
intracellular
|YER047C|SAP1MSS11
|YPL140C|MKK2protein amino acid phosphorylation, signal transduction ->
phosphorus metabolism, signal transduction, protein metabolism
MAP kinase kinase activity ->
protein kinase activity
intracellular ->
intracellular
FKH1, FKH2
Main:cell organization and biogenesis (0.43)protein kinase activity (0.33)intracellular (0.83)SWI4 (0.12)
Score:0.480.070.670.000
P-value:6.497E-01 (DNA replication)5.827E-01 (protein kinase activity)2.383E-01 (nuclear chromosome)1.000E+00

ALPHA1(1) AND ALPHA1'(1) AND SFF(1) AND mRRPE(1) AND PAC(1) => SimExpr(YJL033W) OR SimExpr(other) : 5 2

    EXPR: (0.130) ALPHA1' (P < 0.000) SFF (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.011) ALPHA1 (P < 0.000)

ORFSYMBOLPFCTF
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
protein amino acid glycosylation, phosphoinositide biosynthesis, protein lipidation, phosphoinositide metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network
SWI5
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YJL109CUTP10processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
|YCR072C|NO SYMBOLYFL044C
YGL029WCGR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YHR169WDBP835S primary transcript processing ->
rRNA processing
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleolus
YJL033WHCA435S primary transcript processing ->
rRNA processing
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleolus
HIR2, USV1
Main:rRNA processing (0.80)RNA binding (0.75)nucleolus (0.80)RTS2 (0.25)
Score:0.600.500.600.000
P-value:5.741E-04 (rRNA processing)1.253E-02 (ATP dependent RNA helicase activity)5.230E-04 (nucleolus)4.642E-01 (RTS2)

ALPHA2(1) AND SFF'(1) AND MCB(1) => SimExpr(YFR027W) OR SimExpr(other) : 5 1

    EXPR: (0.129) ALPHA2 (P < 0.000) SFF' (P < 0.000) MCB (P < 0.019)

ORFSYMBOLPFCTF
YJL095WBCK1protein amino acid phosphorylation, protein kinase cascade, response to nutrients, establishment of cell polarity (sensu Saccharomyces) ->
phosphorus metabolism, signal transduction, response to extracellular stimulus, cell organization and biogenesis, protein metabolism, response to abiotic stimulus
MAP kinase kinase kinase activity ->
protein kinase activity
intracellular ->
intracellular
YAP1
YPR185WAPG13protein-vacuolar targeting, autophagy ->
cell organization and biogenesis, autophagy, protein metabolism, transport
protein binding ->
protein binding
extrinsic to membrane ->
extrinsic to membrane
MET4, SWI6
YFR027WECO1sister chromatid cohesion, DNA replication, DNA repair ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, cell proliferation
acetyltransferase activity ->
acyltransferase activity
intracellular ->
intracellular
YPL140CMKK2protein amino acid phosphorylation, signal transduction ->
phosphorus metabolism, signal transduction, protein metabolism
MAP kinase kinase activity ->
protein kinase activity
intracellular ->
intracellular
FKH1, FKH2
YDR297WSUR2sphingolipid metabolism, sphingolipid biosynthesis ->
lipid metabolism, biosynthesis
sphingosine hydroxylase activity ->
sphingosine hydroxylase activity
intracellular ->
intracellular
CBF1, MTH1
|YPL241C|CIN2microtubule-based process ->
cell organization and biogenesis
HIR2
Main:cell organization and biogenesis (0.50)protein kinase activity (0.40)intracellular (0.80)MTH1 (0.20)
Score:0.330.100.600.000
P-value:1.834E-01 (protein amino acid phosphorylation)2.368E-01 (protein kinase activity)3.838E+00 (intracellular)6.695E-01 (MET4)

ALPHA1'(1) AND STE12(1) AND PAC(1) => SimExpr(YPR137W) OR SimExpr(other) : 5 1

    EXPR: (0.129) ALPHA1' (P < 0.000) STE12 (P < 0.000) PAC (P < 0.020)

ORFSYMBOLPFCTF
YGR158CMTR335S primary transcript processing, mRNA catabolism ->
cell organization and biogenesis, catabolism, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
3'-5' exoribonuclease activity ->
hydrolase activity\, acting on ester bonds, RNA binding
nuclear exosome (RNase complex), cytoplasmic exosome (RNase complex) ->
exosome (RNase complex), cytoplasm, nucleus
ZMS1
YPR137WRRP9rRNA modification, 35S primary transcript processing, processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism, transcription
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex, small nuclear ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, HIR1, RCS1
YNL308CKRI1ribosome biogenesis ->
cell organization and biogenesis
nucleolus ->
nucleus
|YMR302C|PRP12mitochondrial genome maintenance, rRNA processing ->
cell organization and biogenesis, RNA metabolism, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
exonuclease activity ->
hydrolase activity\, acting on ester bonds
mitochondrial inner membrane ->
cytoplasm, inner membrane
YGR251WNO SYMBOLMSN4, PHD1, SKN7
YAL059WECM1cell wall organization and biogenesis ->
cell organization and biogenesis
MOT3
Main:cell organization and biogenesis (1.00)RNA binding (0.67)nucleus (0.75)ABF1 (0.25)
Score:1.000.670.670.000
P-value:7.075E-04 (ribosome biogenesis)1.507E-02 (exonuclease activity)1.602E-01 (nucleolus)3.331E-01 (ZMS1)

ALPHA2(1) AND ALPHA1'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YJR070C) OR SimExpr(other) : 5 2

    EXPR: (0.126) ALPHA2 (P < 0.000) ALPHA1' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.002)

ORFSYMBOLPFCTF
YJR070CNO SYMBOLGAT3, YAP5
YPR183WDPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
lipid biosynthesis, biosynthesis, membrane lipid metabolism, protein metabolism, lipoprotein metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network
SWI5
YMR049CERB1rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RTG3
|YGL029W|CGR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleolus
YHR128WFUR1pyrimidine salvage ->
biosynthesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
uracil phosphoribosyltransferase activity ->
transferase activity\, transferring glycosyl groups
CIN5
|YJL033W|HCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleolus
HIR2, USV1
YLR222CUTP13processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
ABF1
Main:nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism (0.83)RNA binding (0.50)nucleolus (0.75)ABF1 (0.17)
Score:0.730.330.500.000
P-value:5.741E-04 (rRNA processing)1.075E-01 (transferase activity\, transferring glycosyl groups)1.279E-02 (nucleolus)6.889E-01 (USV1)

ABF1(1) AND SFF(1) AND PAC(1) => SimExpr(YDL063C) OR SimExpr(other) : 6 3

    EXPR: (0.124) ABF1 (P < 0.000) SFF (P < 0.000) PAC (P < 0.037)

ORFSYMBOLPFCTF
YOL041CNOP12rRNA metabolism ->
rRNA metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
GTS1, MET31
|YGR283C|NO SYMBOLACE2, RAP1, SMP1
|YDR312W|SSF2ribosomal large subunit assembly and maintenance, conjugation with cellular fusion ->
ribosome biogenesis and assembly, conjugation with cellular fusion
rRNA binding ->
RNA binding
nucleolus ->
nucleus
ABF1, FKH2, INO4, RAP1
YJL069CUTP18ABF1
YKL014CNO SYMBOLABF1
YER110CKAP123protein-nucleus import ->
intracellular protein transport, nucleocytoplasmic transport, protein metabolism
protein carrier activity ->
protein carrier activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YGR187CHGH1ABF1, HAP3, HIR1, RCS1, RTG1
YDL063CNO SYMBOLHAL9, HAP2, MOT3
|YKL078W|DHR2ribosome biogenesis ->
ribosome biogenesis and assembly
RNA helicase activity ->
RNA binding
nucleolus ->
nucleus
ABF1
Main:ribosome biogenesis and assembly (0.50)RNA binding (0.75)nucleus (1.00)ABF1 (0.62)
Score:0.170.501.000.393
P-value:6.381E-01 (ribosome biogenesis and assembly)1.473E-01 (RNA binding)2.890E-02 (nucleolus)2.023E-03 (ABF1)

ABF1(1) AND mRRPE(1) AND PAC(1) => SimExpr(YDL063C) OR SimExpr(other) : 8 2

    EXPR: (0.122) ABF1 (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.023)

ORFSYMBOLPFCTF
YKL172WEBP2rRNA processing ->
ribosome biogenesis, RNA processing, transcription from Pol I promoter
nucleolus ->
nucleus
ABF1, FZF1, RFX1
YJL069CUTP18ABF1
YKL014CNO SYMBOLABF1
YER110CKAP123protein-nucleus import ->
protein targeting, nucleocytoplasmic transport
protein carrier activity ->
protein carrier activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
|YPR010C|RPA135transcription from Pol I promoter ->
transcription from Pol I promoter
DNA-directed RNA polymerase activity ->
DNA-directed RNA polymerase activity
DNA-directed RNA polymerase I complex ->
nucleus
ROX1, SIG1
YGR187CHGH1ABF1, HAP3, HIR1, RCS1, RTG1
YJL050WMTR435S primary transcript processing ->
ribosome biogenesis, RNA processing, transcription from Pol I promoter
ATP dependent RNA helicase activity ->
RNA helicase activity, ATP dependent helicase activity, RNA dependent ATPase activity
nucleolus ->
nucleus
YNL112WDBP2RNA helicase activity ->
RNA helicase activity
bud neck ->
site of polarized growth (sensu Fungi)
|YNR046W|NO SYMBOLABF1
YDL063CNO SYMBOLHAL9, HAP2, MOT3
Main:transcription from Pol I promoter (0.75)RNA helicase activity (0.50)nucleus (0.80)ABF1 (0.71)
Score:0.500.170.600.476
P-value:8.012E-02 (transcription from Pol I promoter)3.529E-02 (RNA helicase activity)4.007E-02 (nucleolus)3.060E-03 (ABF1)

ABF1(1) AND SFF(1) AND mRRPE(1) AND PAC(1) => SimExpr(YDL063C) : 5

    EXPR: (0.095) ABF1 (P < 0.000) SFF (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.000)

ORFSYMBOLPFCTF
YJL069CUTP18ABF1
YKL014CNO SYMBOLABF1
YER110CKAP123protein-nucleus import ->
protein-nucleus import
protein carrier activity ->
protein carrier activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nuclear pore, nucleus
YGR187CHGH1ABF1, HAP3, HIR1, RCS1, RTG1
YDL063CNO SYMBOLHAL9, HAP2, MOT3
Main:protein-nucleus import (1.00)protein carrier activity (1.00)nuclear pore (1.00)ABF1 (0.75)
Score:0.000.000.000.500
P-value:0.000E+000.000E+000.000E+002.194E-02 (ABF1)

mRRPE(1) AND PAC(1) => SimExpr(YKL172W) OR SimExpr(other) : 63 27

SFF(1) AND mRRPE(1) AND PAC(1) => SimExpr(YML093W) OR SimExpr(other) : 30 7

SFF(1) AND mRRPE(1) AND PAC(1) AND MCM1'(1) => SimExpr(YML093W) : 6

LYS14(1) AND mRRPE(1) AND PAC(1) => SimExpr(YHR052W) OR SimExpr(other) : 8 1

LYS14(1) AND SFF(1) AND mRRPE(1) AND PAC(1) => SimExpr(YHR052W) : 5

SFF'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YLR276C) OR SimExpr(other) : 36 11

SFF(1) AND BAS1(1) AND PAC(1) => SimExpr(YLR276C) OR SimExpr(other) : 5 2

    EXPR: (0.124) SFF (P < 0.000) BAS1 (P < 0.000) PAC (P < 0.018)

ORFSYMBOLPFCTF
|YER115C|SPR6sporulation (sensu Fungi) ->
sporulation (sensu Fungi)
ARG80, RTG3
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YCL059CKRR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
ribosomal subunit assembly, rRNA processing
ATP dependent RNA helicase activity ->
ATP dependent RNA helicase activity
nucleolus ->
nucleolus
MATa1, RCS1, RTG3, SWI5
|YCR090C|NO SYMBOL
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
mitochondrial inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
Main:rRNA processing (0.50)ATP dependent RNA helicase activity (0.50)nucleolus (0.67)RTG3 (0.50)
Score:0.170.000.330.167
P-value:3.283E-01 (rRNA processing)2.000E+001.871E-01 (nucleolus)4.091E-02 (RTG3)

SFF(1) AND SFF'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YLR276C) OR SimExpr(other) : 27 7

    EXPR: (0.130) SFF (P < 0.000) SFF' (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.000)

ORFSYMBOLPFCTF
YNR053CNOG2mRNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, nucleolus, nucleoplasm ->
nucleus, nucleoplasm
ABF1, AZF1
YML125CNO SYMBOLMAL13, MSN4, NDD1, RME1, SWI5
YDR101CARX1ribosomal large subunit biogenesis ->
cell organization and biogenesis
nucleoplasm, cytoplasm ->
nucleus, cytoplasm
IXR1, RFX1
YDR279WRNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
|YOR359W|VTS1protein-vacuolar targeting ->
cell organization and biogenesis, protein metabolism, transport
intracellular transporter activity ->
transporter activity
cytosol ->
cytoplasm
RAP1
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
lipid biosynthesis, biosynthesis, membrane lipid metabolism, protein metabolism, lipoprotein metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
cytoplasm, endomembrane system
SWI5
YOR078WBUD21processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YJL109CUTP10processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YJL069CUTP18ABF1
YKL014CNO SYMBOLABF1
|YER110C|KAP123protein-nucleus import ->
protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YCL059CKRR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
|YCR072C|NO SYMBOLYFL044C
YCR016WNO SYMBOL
|YLR249W|YEF3translational elongation ->
biosynthesis, protein metabolism
translation elongation factor activity ->
translation factor activity\, nucleic acid binding
ribosome ->
cytoplasm, ribonucleoprotein complex
INO2, INO4
YDR449CUTP6processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YGR187CHGH1ABF1, HAP3, HIR1, RCS1, RTG1
YGL016WKAP122protein-nucleus import, response to drug ->
response to abiotic stimulus, protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore ->
cytoplasm, nucleus, integral to membrane, endomembrane system
MSN2
|YJL138C|TIF2translational initiation, regulation of translational initiation ->
biosynthesis, protein metabolism
translation initiation factor activity, RNA helicase activity ->
translation factor activity\, nucleic acid binding, RNA binding
ribosome, cytoplasm ->
cytoplasm, ribonucleoprotein complex
PHD1
YHR052WCIC1protein catabolism ->
catabolism, protein metabolism
protein binding\, bridging ->
protein binding\, bridging
nucleolus, proteasome complex (sensu Eukarya) ->
nucleus, cytoplasm
HAP4, MATa1
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
MATa1, RCS1, RTG3, SWI5
YHR169WDBP835S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
|YCR090C|NO SYMBOL
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
YMR290CHAS1nucleolus, nuclear membrane ->
nucleus, endomembrane system
RAP1
YGL078CDBP3ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
YDL063CNO SYMBOLHAL9, HAP2, MOT3
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YGR145WENP2
YLR222CUTP13processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1
Main:cell organization and biogenesis (0.62)RNA binding (0.56)nucleus (0.77)ABF1 (0.26)
Score:0.540.370.760.099
P-value:8.576E-08 (rRNA processing)4.244E-04 (RNA helicase activity)1.720E-10 (nucleolus)1.000E+00

SFF(1) AND mRRPE(1) AND BAS1(1) AND PAC(1) => SimExpr(YLR276C) OR SimExpr(other) : 5 1

    EXPR: (0.108) SFF (P < 0.000) mRRPE (P < 0.000) BAS1 (P < 0.000) PAC (P < 0.001)

ORFSYMBOLPFCTF
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YCL059CKRR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
ribosomal subunit assembly, rRNA processing
ATP dependent RNA helicase activity ->
ATP dependent RNA helicase activity
nucleolus ->
nucleolus
MATa1, RCS1, RTG3, SWI5
|YCR090C|NO SYMBOL
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
mitochondrial inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
Main:rRNA processing (0.67)ATP dependent RNA helicase activity (0.50)nucleolus (0.67)RTS2 (0.33)
Score:0.330.000.330.000
P-value:2.394E-01 (rRNA processing)2.000E+001.373E-01 (nucleolus)4.793E-01 (MATa1)

SFF'(1) AND mRRPE(1) AND BAS1(1) AND PAC(1) => SimExpr(YLR276C) OR SimExpr(other) : 5 1

    EXPR: (0.108) SFF' (P < 0.000) mRRPE (P < 0.001) BAS1 (P < 0.000) PAC (P < 0.002)

ORFSYMBOLPFCTF
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YCL059CKRR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
ribosomal subunit assembly, rRNA processing
ATP dependent RNA helicase activity ->
ATP dependent RNA helicase activity
nucleolus ->
nucleolus
MATa1, RCS1, RTG3, SWI5
|YCR090C|NO SYMBOL
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
mitochondrial inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
Main:rRNA processing (0.67)ATP dependent RNA helicase activity (0.50)nucleolus (0.67)RTS2 (0.33)
Score:0.330.000.330.000
P-value:2.394E-01 (rRNA processing)2.000E+001.373E-01 (nucleolus)4.793E-01 (MATa1)

ALPHA1'(1) AND SFF(1) AND mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YBR104W) : 5

    EXPR: (0.113) ALPHA1' (P < 0.000) SFF (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.004) SCB (P < 0.000)

ORFSYMBOLPFCTF
YOR078WBUD21processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YJL109CUTP10processing of 20S pre-rRNA ->
rRNA processing
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleolus, ribonucleoprotein complex
YCL059CKRR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YGR280CPXR135S primary transcript processing, snRNA processing ->
rRNA processing, snRNA processing
RNA binding ->
RNA binding
nucleolus ->
nucleolus
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
mitochondrion, inner membrane
FKH1, FKH2
Main:rRNA processing (0.80)RNA binding (0.75)nucleolus (0.80)ABF1 (0.50)
Score:0.600.500.600.000
P-value:8.613E-05 (rRNA processing)3.111E-03 (snoRNA binding)1.062E-04 (nucleolus)3.159E-01 (SKO1)

SFF(1) AND BAS1(1) AND PAC(1) => SimExpr(YCL059C) OR SimExpr(other) : 5 2

mRRPE(1) AND BAS1(1) AND PAC(1) => SimExpr(YCL059C) OR SimExpr(other) : 6 1

    EXPR: (0.111) mRRPE (P < 0.000) BAS1 (P < 0.000) PAC (P < 0.003)

ORFSYMBOLPFCTF
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YCL059CKRR1ribosome biogenesis, rRNA processing ->
ribosome biogenesis, rRNA processing
nucleolus ->
nucleolus
YMR049CERB1rRNA processing ->
rRNA processing
RTG3
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
ribosomal subunit assembly, rRNA processing
ATP dependent RNA helicase activity ->
ATP dependent RNA helicase activity
nucleolus ->
nucleolus
MATa1, RCS1, RTG3, SWI5
|YCR090C|NO SYMBOL
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
mitochondrial inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
Main:rRNA processing (0.75)ATP dependent RNA helicase activity (0.50)nucleolus (0.67)RTG3 (0.50)
Score:0.500.000.330.167
P-value:1.729E-02 (rRNA processing)2.000E+001.871E-01 (nucleolus)3.682E-02 (RTG3)

ALPHA1'(1) AND SFF'(1) AND mRRPE(1) AND PAC(1) => SimExpr(YCL059C) OR SimExpr(other) : 24 5

ALPHA1'(1) AND SFF(1) AND mRRPE(1) AND PAC(1) => SimExpr(YCL059C) OR SimExpr(other) : 19 5

    EXPR: (0.128) ALPHA1' (P < 0.000) SFF (P < 0.000) mRRPE (P < 0.000) PAC (P < 0.000)

ORFSYMBOLPFCTF
YNR053CNOG2mRNA splicing ->
nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
GTPase activity ->
purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleus, nucleolus, nucleoplasm ->
nucleus, nucleoplasm
ABF1, AZF1
YDR279WRNH202GCR2, MBP1, RIM101, RLM1, SWI6, THI2
YDR496CPUF6RFX1
|YOR359W|VTS1protein-vacuolar targeting ->
cell organization and biogenesis, protein metabolism, transport
intracellular transporter activity ->
transporter activity
cytosol ->
cytoplasm
RAP1
|YPR183W|DPM1N-linked glycosylation, O-linked glycosylation, GPI anchor biosynthesis ->
lipid biosynthesis, biosynthesis, membrane lipid metabolism, protein metabolism, lipoprotein metabolism
transferase activity\, transferring glycosyl groups, dolichyl-phosphate beta-D-mannosyltransferase activity ->
transferase activity\, transferring glycosyl groups
endoplasmic reticulum, nuclear envelope-endoplasmic reticulum network ->
cytoplasm, endomembrane system
SWI5
YOR078WBUD21processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1, MSS11, SIG1, SKO1
YOL022CNO SYMBOLMAC1, MOT3, RTS2
YJL109CUTP10processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YKL014CNO SYMBOLABF1
|YER110C|KAP123protein-nucleus import ->
protein metabolism, transport
protein carrier activity ->
transporter activity
cytoplasm, nuclear pore, nucleus ->
cytoplasm, nucleus, integral to membrane, endomembrane system
YCL059CKRR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
|YCR072C|NO SYMBOLYFL044C
YCR016WNO SYMBOL
YDR449CUTP6processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
FHL1, GAT3, HIR2, RAP1, RGM1, YAP5
YGR280CPXR135S primary transcript processing, snRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
RNA binding ->
RNA binding
nucleolus ->
nucleus
YML093WUTP14processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
YGL029WCGR1ribosome biogenesis, rRNA processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
nucleolus ->
nucleus
YLR276CDBP9ribosomal large subunit assembly and maintenance, 35S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
MATa1, RCS1, RTG3, SWI5
YHR169WDBP835S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
|YCR090C|NO SYMBOL
YBR104WYMC2transport ->
transport
transporter activity ->
transporter activity
mitochondrial inner membrane ->
cytoplasm, inner membrane
FKH1, FKH2
YNR024WNO SYMBOL
YJL033WHCA435S primary transcript processing ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
ATP dependent RNA helicase activity ->
RNA binding, purine nucleotide binding, hydrolase activity\, acting on acid anhydrides
nucleolus ->
nucleus
HIR2, USV1
YLR222CUTP13processing of 20S pre-rRNA ->
cell organization and biogenesis, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
RNA binding
small nucleolar ribonucleoprotein complex ->
nucleus, ribonucleoprotein complex
ABF1
Main:cell organization and biogenesis (0.75)RNA binding (0.64)nucleus (0.81)ABF1 (0.29)
Score:0.680.460.700.099
P-value:7.285E-10 (rRNA processing)8.857E-06 (snoRNA binding)2.077E-10 (nucleolus)1.000E+00

ALPHA1'(1) AND SFF(1) AND mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YCL059C) : 5

ALPHA1'(1) AND SFF'(1) AND mRRPE(1) AND PAC(1) AND SCB(1) => SimExpr(YCL059C) : 7

ndt80(MSE)(1) AND PDR(1) => SimExpr(YCR045C) OR SimExpr(other) : 5 1

    EXPR: (0.128) ndt80(MSE) (P < 0.000) PDR (P < 0.000)

ORFSYMBOLPFCTF
YBR159WNO SYMBOLACE2, ARG81, GCR2, HIR2, LEU3, MOT3, PDR1, PHD1, SKN7, USV1
YDR317WNO SYMBOLHAL9, RLM1
YCR045CNO SYMBOL
|YKL096W|CWP1cell wall organization and biogenesis ->
cell wall organization and biogenesis
structural constituent of cell wall ->
structural constituent of cell wall
cell wall (sensu Fungi) ->
cell wall (sensu Fungi)
RLM1, SMP1, STE12, SWI4
YMR252CNO SYMBOLSKN7
YDR281CPHM6PHO4, SUM1
Main:cell wall organization and biogenesis (1.00)structural constituent of cell wall (1.00)cell wall (sensu Fungi) (1.00)RLM1 SKN7 (0.40)
Score:0.000.000.000.200
P-value:0.000E+000.000E+000.000E+001.236E-01 (RLM1)

MCB(1) AND PAC(1) => SimExpr(YPR144C) OR SimExpr(other) : 5 2

mRRPE(1) AND STE12(1) AND PAC(1) => SimExpr(YBR247C) : 5

    EXPR: (0.108) mRRPE (P < 0.000) STE12 (P < 0.000) PAC (P < 0.003)

ORFSYMBOLPFCTF
YNL308CKRI1ribosome biogenesis ->
cell growth and/or maintenance
nucleolus ->
nucleolus
YJL069CUTP18ABF1
YBR247CENP1processing of 20S pre-rRNA, rRNA processing, cell growth and/or maintenance ->
cell growth and/or maintenance, nucleobase\, nucleoside\, nucleotide and nucleic acid metabolism
snoRNA binding ->
snoRNA binding
nucleolus, nucleus ->
nucleolus, nucleus
YMR310CNO SYMBOL
YAL059WECM1cell wall organization and biogenesis ->
cell growth and/or maintenance
MOT3
Main:cell growth and/or maintenance (1.00)snoRNA binding (1.00)nucleolus (1.00)ABF1 (0.50)
Score:1.000.001.000.000
P-value:1.419E-01 (ribosome biogenesis)0.000E+009.406E-02 (nucleolus)1.688E-01 (MOT3)

AVERAGE SCORES:

P
  SCORE: 0.661 (Part of genes covered by "Main": 0.771) (No. rules=51/53)
  P-VALUE: 0.667
F
  SCORE: 0.337 (Part of genes covered by "Main": 0.567) (No. rules=43/53)
  P-VALUE: 0.512
C
  SCORE: 0.697 (Part of genes covered by "Main": 0.817) (No. rules=50/53)
  P-VALUE: 0.600
TF
  SCORE: 0.285 (Part of genes covered by "Main": 0.481) (No. rules=49/53)
  P-VALUE: 0.388
EXPRESSION: 0.962 (53)